Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAVB98_RS09235 Genome accession   NZ_CP154895
Coordinates   1747101..1747619 (+) Length   172 a.a.
NCBI ID   WP_013354263.1    Uniprot ID   A0A9P1JL20
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1742101..1752619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS09215 (AAVB98_09215) - 1743179..1743385 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  AAVB98_RS09220 (AAVB98_09220) - 1743432..1745435 (+) 2004 WP_013354266.1 molybdopterin-dependent oxidoreductase -
  AAVB98_RS09225 (AAVB98_09225) ychF 1745562..1746662 (+) 1101 WP_013354265.1 redox-regulated ATPase YchF -
  AAVB98_RS09230 (AAVB98_09230) rpsF 1746774..1747061 (+) 288 WP_013354264.1 30S ribosomal protein S6 -
  AAVB98_RS09235 (AAVB98_09235) ssbA 1747101..1747619 (+) 519 WP_013354263.1 single-stranded DNA-binding protein SsbA Machinery gene
  AAVB98_RS09240 (AAVB98_09240) rpsR 1747663..1747902 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  AAVB98_RS09245 (AAVB98_09245) - 1748091..1748678 (+) 588 WP_013354262.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  AAVB98_RS09250 (AAVB98_09250) - 1748671..1749198 (+) 528 WP_013354261.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AAVB98_RS09255 (AAVB98_09255) xth 1749237..1749995 (+) 759 WP_013354260.1 exodeoxyribonuclease III -
  AAVB98_RS09260 (AAVB98_09260) - 1750058..1750996 (+) 939 WP_014471329.1 LacI family DNA-binding transcriptional regulator -
  AAVB98_RS09265 (AAVB98_09265) - 1751053..1751433 (+) 381 WP_013354257.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18717.29 Da        Isoelectric Point: 4.7621

>NTDB_id=894541 AAVB98_RS09235 WP_013354263.1 1747101..1747619(+) (ssbA) [Bacillus amyloliquefaciens strain Fad 77]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRKQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=894541 AAVB98_RS09235 WP_013354263.1 1747101..1747619(+) (ssbA) [Bacillus amyloliquefaciens strain Fad 77]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTAACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTAGCTGTGAATCGTACATTCACGAACCAGTCTGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAAACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGTCTTCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGTTCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGAAGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JL20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.983
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.628

0.401
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372