Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R3L12_RS11685 Genome accession   NZ_CP137057
Coordinates   2481972..2482547 (-) Length   191 a.a.
NCBI ID   WP_004944846.1    Uniprot ID   A0AB38YZJ4
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2476972..2487547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS11670 (R3L12_11650) gabT 2477061..2478356 (-) 1296 WP_004944850.1 4-aminobutyrate--2-oxoglutarate transaminase -
  R3L12_RS11675 (R3L12_11655) - 2478508..2480007 (+) 1500 WP_048765311.1 PLP-dependent aminotransferase family protein -
  R3L12_RS11680 (R3L12_11660) - 2480078..2481517 (-) 1440 WP_149930662.1 amino acid permease -
  R3L12_RS11685 (R3L12_11665) ssb 2481972..2482547 (-) 576 WP_004944846.1 single-stranded DNA-binding protein Machinery gene
  R3L12_RS11690 (R3L12_11670) - 2482599..2483963 (-) 1365 WP_004934041.1 MFS transporter -
  R3L12_RS11695 (R3L12_11675) - 2484104..2485186 (-) 1083 WP_149930663.1 DUF475 domain-containing protein -
  R3L12_RS11700 (R3L12_11680) tenA 2485388..2486059 (+) 672 WP_149930664.1 thiaminase II -
  R3L12_RS11705 (R3L12_11685) - 2486110..2486421 (-) 312 WP_004934031.1 hypothetical protein -
  R3L12_RS11710 (R3L12_11690) - 2486464..2486805 (-) 342 WP_004934029.1 GlpM family protein -
  R3L12_RS11715 (R3L12_11695) - 2486883..2487236 (-) 354 WP_004944844.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21030.80 Da        Isoelectric Point: 7.0146

>NTDB_id=894478 R3L12_RS11685 WP_004944846.1 2481972..2482547(-) (ssb) [Acinetobacter soli strain SNUBHAB0075]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKSTGERKEQTEWHRIVLNNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDTRSQGEQPMGGGQDYNQPRFNNNAPQQNTGYNNQGGGYNNKNNAGANQGGG
YGNNAAGNQGGYAPKAPQQPAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=894478 R3L12_RS11685 WP_004944846.1 2481972..2482547(-) (ssb) [Acinetobacter soli strain SNUBHAB0075]
ATGCGTGGTGTGAATAAAGTAATTTTAGTTGGGACCTTGGGCCGTGACCCGGAAACCAAAACGTTTCCAAATGGCGGGTC
ATTGACTCAATTTTCGATTGCAACCAGCGAATCGTGGACAGATAAAAGTACGGGTGAGCGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGTTGAATAACCGTCTAGGTGAAATTGCACAGCAATACCTGCGTAAAGGTTCAAAAGTGTACATTGAGGGT
TCATTGCGTACCCGCCAGTGGACAGACCAAAACGGTCAAGAGCGCTATACCACCGAAATTCGTGGCGACCAGATGCAAAT
GCTTGATACACGTAGCCAAGGCGAGCAGCCTATGGGTGGTGGTCAGGACTACAACCAGCCACGCTTTAACAACAATGCAC
CGCAGCAAAACACCGGCTACAACAACCAAGGCGGTGGTTATAACAACAAAAACAACGCTGGTGCCAACCAAGGTGGCGGT
TATGGCAACAATGCTGCGGGTAATCAAGGTGGTTATGCACCTAAAGCTCCACAGCAACCTGCTCCAGCAGATCTAGACGA
CGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.974

100

0.55
  ssb Vibrio cholerae strain A1552

44.221

100

0.461
  ssb Neisseria meningitidis MC58

39.175

100

0.398
  ssb Neisseria gonorrhoeae MS11

39.175

100

0.398