Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   R3L12_RS11080 Genome accession   NZ_CP137057
Coordinates   2329648..2334009 (-) Length   1453 a.a.
NCBI ID   WP_348889583.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2324648..2339009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS11045 (R3L12_11025) - 2325308..2326279 (+) 972 WP_149930033.1 triacylglycerol lipase -
  R3L12_RS11050 (R3L12_11030) rplS 2326346..2326717 (-) 372 WP_004934323.1 50S ribosomal protein L19 -
  R3L12_RS11055 (R3L12_11035) trmD 2326927..2327661 (-) 735 WP_004934319.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  R3L12_RS11060 (R3L12_11040) rimM 2327710..2328258 (-) 549 WP_004934317.1 ribosome maturation factor RimM -
  R3L12_RS11065 (R3L12_11045) rpsP 2328276..2328533 (-) 258 WP_004934313.1 30S ribosomal protein S16 -
  R3L12_RS11070 (R3L12_11050) comF 2328675..2329118 (-) 444 WP_149930034.1 type IV pilin protein Machinery gene
  R3L12_RS11075 (R3L12_11055) comE 2329112..2329582 (-) 471 WP_406626456.1 type IV pilin protein Machinery gene
  R3L12_RS11080 (R3L12_11060) comC 2329648..2334009 (-) 4362 WP_348889583.1 PilC/PilY family type IV pilus protein Machinery gene
  R3L12_RS11085 (R3L12_11065) pilX 2334027..2334695 (-) 669 WP_149930036.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  R3L12_RS11090 (R3L12_11070) comB 2334692..2335720 (-) 1029 WP_149930037.1 PilW family protein Machinery gene
  R3L12_RS11095 (R3L12_11075) pilV 2335721..2336257 (-) 537 WP_149930038.1 type IV pilus modification protein PilV Machinery gene
  R3L12_RS11100 (R3L12_11080) - 2336254..2336700 (-) 447 WP_149930039.1 Tfp pilus assembly protein FimT/FimU -
  R3L12_RS11105 (R3L12_11085) ispH 2336821..2337771 (-) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R3L12_RS11110 (R3L12_11090) gmk 2337907..2338530 (+) 624 WP_025095725.1 guanylate kinase -
  R3L12_RS11115 (R3L12_11095) rpoZ 2338599..2338880 (+) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 1453 a.a.        Molecular weight: 157121.81 Da        Isoelectric Point: 7.7993

>NTDB_id=894468 R3L12_RS11080 WP_348889583.1 2329648..2334009(-) (comC) [Acinetobacter soli strain SNUBHAB0075]
MKNKKSKRFNPLLGTATPQHHRMLCTAMMSVSLIIACNVQASDVEVYHQGAQFDKRLMLMVDQSRTMGGAGVLDLLKEYP
ICVGKGVSNILGSGGGLGLLGDKDALELVTNTVGAVDQVALQGLLGGSLDPLLKITTESPSSKYNYARNYCTVVTTDLVV
KTLDGLLKPLLGATGLDAKSYIENTCDFQANVKLLNSVSAVGVYRCYDKLSRVKNALTDVLLGNSSTGLKPLPDNVSVGI
SVMPVDVMTSDRAGRILAPACKLSTTRASDTNFRCFEKTYTGSATTYRNYLVEKIAGNIQSKGDFNLQNVLVIVPKLIAA
LVGDIFSKLWSILSNPVKGLSELLEFKGTASTVNDLLKTLGLAGNVPTASTYAETGAYLMGTTTKGTGARQIAMRIIPVK
VLFLPLLGWYDYKCDKYGTDSWQSDGVTCKDDAWQYKSGGISTTNLIQVNDDLVSSLISDGVVGGLLNGVVGNILGIKVS
EKHLYYGYDSQADIEYSGFSNSVDASKRSTTFYRAPTDTPQCNANGIMVITGGVPNITPTVTDALLKQGAEGLGTQNAIE
RLMGRSLNTSATDLSKLDLSNVFQCDASAGLKSTTLSSRDYATWSCIGNYTKKLLDKNITTGVIGVGREFTTIPSTTDSA
QLEASMTGVNNSLLGQIVPNLLNDTLNVLLGGTLVNGLTSLLGNVFPTDAEDVKNLARWGVLGKGGWYNSASSENIANSI
YNFYANLGISNRETFLGVPVVPTDPLTPYNLDNYVFQNMFVPDDKQTWFGNVKKYLADTGETIQTKTITDVWSNSNIQST
KTSILTGGFADKLPTATSSSASSRQLYVNRACITKDKKYDVSASIGLIGNDYYTKLCESQSKDPRRSDLMNLLGYQIQTT
NNQESLIAKPEYKKVGMVLHSSPIKITQSATIKNDGSLTRDDYMVFGTVQGLLHVVNASTGVEKFAFLPNELLENAKQRK
AFTGTNLEGHDNFNNMQYGIDAPWTAYSEYVWNTKDGKLTVGKSATDATCIKDGVSTGACGKQYLYGGLRMGGRSYYALD
LSLWDDQTKPSLKFYIDPASGKVYSSTTPEGKSFDAIKYMGQSWSKPTVAWVNWQGKRKLVMFVGGGYDAGGTDGNANNG
GYEQVSYAQSNKIGSGVYMFDAENGDLLWWASNLATTANTGATMALKTNMQYSVVSRINAVDRNGDGLVDHLYFGDLGGQ
LWRVDINNGSNPQQFAQAAQLLDLQNNKPTDLTDANLRFYEAPIFSVYGYGANSLAVLSIATTNRSLPISDQSAGVVFNL
FDNDVTQVSFSTRDMAANNKNLVAYAQLPKYGELTMVNRPQYGWYAKLSNQQKVMDEPVVINKNLYVSIYDPIAQEGRVA
DCSIGVQGLSSVRRFCLPYGVCEKSADLTTTLKLGKGILPVTIGAGTTSNGVTTRQILGGSSTDRDSTKDVLSSTQTTRR
QIVPLKWYEQYTP

Nucleotide


Download         Length: 4362 bp        

>NTDB_id=894468 R3L12_RS11080 WP_348889583.1 2329648..2334009(-) (comC) [Acinetobacter soli strain SNUBHAB0075]
ATGAAAAACAAGAAATCTAAAAGATTTAATCCCTTACTTGGTACCGCTACACCTCAGCATCATCGGATGCTGTGTACAGC
TATGATGAGCGTTTCACTGATAATTGCATGCAACGTTCAGGCCAGTGATGTTGAGGTTTATCATCAAGGGGCACAATTTG
ATAAGCGTTTAATGCTGATGGTCGATCAGTCCCGCACCATGGGGGGAGCAGGAGTACTCGATTTATTAAAAGAATATCCT
ATTTGTGTGGGGAAAGGTGTCTCTAATATTTTAGGTTCAGGGGGTGGGCTGGGGCTGCTAGGCGATAAAGACGCGCTTGA
GTTGGTTACCAATACCGTAGGTGCAGTCGATCAGGTGGCTTTACAGGGCTTACTGGGCGGGAGTCTGGATCCGCTGTTAA
AGATCACCACAGAGTCACCGAGCAGTAAATACAACTATGCACGCAATTACTGTACCGTGGTCACCACAGATTTGGTGGTA
AAAACACTCGATGGTTTATTAAAACCGCTGCTGGGTGCAACCGGGCTAGACGCCAAAAGTTATATCGAAAATACCTGTGA
TTTTCAGGCCAATGTCAAACTGCTGAACAGTGTTTCTGCGGTGGGTGTATATCGATGCTATGACAAACTTTCACGGGTCA
AAAATGCCTTAACGGACGTATTGCTTGGAAATAGTAGTACAGGGCTCAAACCTCTGCCAGACAATGTCAGTGTCGGGATA
TCGGTCATGCCGGTCGATGTTATGACCAGTGATCGTGCGGGACGTATTTTGGCGCCTGCCTGTAAGCTGTCGACCACTCG
AGCCAGTGATACCAATTTCCGTTGTTTTGAAAAGACCTACACAGGGAGTGCCACCACGTATCGTAACTATCTAGTCGAAA
AAATTGCAGGAAATATTCAGTCCAAAGGCGATTTTAATCTACAAAATGTATTGGTGATTGTGCCGAAACTGATTGCAGCG
TTGGTGGGCGATATCTTTAGTAAACTCTGGAGCATTCTTTCAAATCCAGTAAAAGGTTTGTCTGAATTGCTAGAGTTCAA
GGGCACAGCCAGCACCGTCAATGATTTACTCAAAACTCTTGGACTCGCAGGGAATGTTCCAACCGCCAGTACCTATGCAG
AGACGGGTGCCTATTTAATGGGAACCACCACCAAGGGTACTGGTGCTAGACAAATAGCAATGAGAATTATTCCAGTAAAA
GTTCTATTTCTTCCACTATTAGGCTGGTACGATTATAAATGTGATAAATACGGAACAGATAGCTGGCAATCTGATGGTGT
AACGTGTAAGGATGATGCTTGGCAGTATAAGTCTGGTGGAATATCAACAACTAATCTTATACAGGTAAATGATGATCTGG
TCAGCTCCCTTATCAGTGATGGAGTGGTAGGGGGGCTTTTAAATGGTGTGGTTGGTAACATCTTGGGAATCAAGGTCTCA
GAGAAACATCTCTACTATGGCTATGATTCACAAGCTGATATTGAATATAGCGGCTTTAGTAATTCGGTCGATGCCAGCAA
ACGTTCTACTACATTTTATCGCGCACCGACAGACACACCGCAATGTAATGCTAACGGTATTATGGTGATTACTGGTGGCG
TACCAAATATCACCCCAACGGTTACCGATGCACTGCTTAAGCAAGGCGCGGAAGGGCTGGGCACACAAAATGCGATTGAG
CGTTTGATGGGCCGTTCACTCAATACTTCGGCCACAGACTTGTCGAAGCTTGATCTTAGTAACGTTTTTCAGTGTGATGC
ATCGGCAGGATTAAAATCGACCACTTTAAGTAGCCGTGATTATGCCACGTGGAGCTGCATTGGTAATTACACCAAAAAGC
TACTCGATAAAAATATCACCACGGGTGTGATTGGCGTTGGGCGTGAATTTACCACGATTCCAAGCACTACAGATTCAGCC
CAGCTTGAAGCATCTATGACGGGTGTAAATAATTCGCTATTGGGTCAGATTGTTCCGAATTTATTAAATGACACCTTAAA
CGTATTGCTTGGTGGTACGTTGGTGAATGGTTTAACCAGTTTGCTTGGCAATGTGTTTCCAACCGATGCCGAGGATGTCA
AAAATTTGGCACGGTGGGGCGTATTGGGTAAAGGGGGCTGGTATAACTCAGCCAGCTCAGAAAATATTGCCAACAGTATT
TATAACTTCTATGCCAATTTGGGCATTAGTAACCGGGAAACCTTTTTAGGCGTACCTGTGGTGCCAACAGATCCACTGAC
CCCATACAATCTTGATAACTATGTTTTTCAAAACATGTTTGTTCCCGACGACAAACAAACTTGGTTTGGGAATGTAAAAA
AATATTTGGCCGATACAGGTGAAACCATACAGACCAAAACCATCACCGATGTCTGGAGTAATAGCAACATACAATCCACC
AAAACCAGTATTTTAACGGGTGGGTTTGCAGACAAATTACCTACAGCGACCAGTAGCAGTGCATCTAGCCGGCAGTTATA
CGTGAACCGCGCGTGTATCACGAAAGATAAAAAATATGATGTTTCCGCTTCAATTGGGCTGATTGGAAACGACTACTACA
CCAAGCTCTGCGAAAGTCAAAGTAAAGACCCGCGCCGTAGCGATTTGATGAACCTGCTGGGCTATCAAATTCAAACCACC
AATAATCAAGAAAGTCTGATTGCCAAACCTGAATATAAAAAAGTCGGGATGGTGCTTCATTCATCGCCAATCAAAATTAC
CCAGTCGGCTACCATTAAAAATGATGGTTCATTGACACGTGATGATTATATGGTATTTGGTACCGTGCAAGGGCTTTTAC
ATGTGGTCAATGCCAGTACAGGTGTAGAAAAATTTGCATTTTTACCCAATGAGCTACTTGAAAATGCCAAGCAGCGTAAA
GCCTTTACAGGTACAAATCTTGAGGGACACGACAACTTTAACAATATGCAATACGGCATTGATGCGCCGTGGACCGCCTA
CAGTGAATACGTGTGGAACACTAAAGATGGCAAACTCACTGTTGGTAAGTCCGCCACAGATGCAACCTGTATAAAAGATG
GCGTCTCGACGGGCGCCTGCGGTAAGCAATACCTTTATGGTGGATTACGTATGGGTGGACGCAGTTATTATGCCCTGGAT
TTGAGCCTATGGGATGATCAAACCAAACCAAGCTTAAAGTTCTATATTGATCCTGCTTCTGGTAAAGTTTATTCATCCAC
CACACCAGAAGGAAAAAGCTTCGATGCCATCAAGTACATGGGGCAAAGCTGGTCGAAACCAACCGTGGCATGGGTGAACT
GGCAGGGCAAACGCAAATTGGTCATGTTTGTGGGTGGTGGCTACGATGCAGGTGGAACCGATGGTAATGCCAATAATGGC
GGATACGAACAGGTCAGTTACGCTCAGAGCAATAAGATTGGTTCGGGTGTGTACATGTTTGATGCCGAAAATGGCGATCT
GCTCTGGTGGGCCAGCAATTTGGCCACCACAGCCAATACCGGTGCCACCATGGCCTTGAAAACCAACATGCAATATAGCG
TCGTCAGTCGGATCAATGCAGTAGATCGAAATGGTGATGGTTTGGTGGATCATTTGTACTTTGGTGATTTGGGCGGACAA
CTCTGGCGTGTCGATATTAATAACGGCAGTAATCCTCAACAGTTTGCGCAGGCAGCACAGTTGCTCGATCTGCAAAACAA
TAAACCAACTGATTTAACTGATGCCAATTTACGTTTTTATGAAGCACCTATTTTTAGTGTGTATGGATATGGTGCCAATT
CACTTGCTGTGTTAAGTATTGCAACCACTAACCGCAGTTTACCGATTAGTGATCAAAGTGCCGGGGTGGTATTTAATCTT
TTCGACAACGATGTCACACAGGTGAGTTTTAGCACCCGTGATATGGCAGCAAACAATAAAAATTTAGTCGCTTATGCACA
ATTGCCAAAATATGGGGAGCTGACCATGGTCAATCGCCCGCAATATGGTTGGTATGCCAAATTAAGCAACCAGCAAAAGG
TGATGGATGAACCTGTGGTCATCAATAAAAATCTGTATGTGAGTATTTATGATCCGATTGCACAAGAAGGACGTGTGGCA
GATTGCTCAATTGGTGTGCAAGGTTTGAGTAGTGTCCGTCGCTTTTGTCTGCCATATGGTGTGTGCGAAAAGTCGGCTGA
CCTGACAACAACACTTAAACTTGGAAAAGGCATTTTACCTGTGACGATTGGCGCCGGTACCACCAGCAATGGCGTAACGA
CCCGACAAATCTTGGGGGGAAGTTCAACCGATCGTGACTCGACCAAAGATGTGCTCTCAAGTACCCAAACCACGCGGCGT
CAGATTGTGCCATTAAAATGGTATGAACAGTACACCCCTTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(914-1214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Acinetobacter baylyi ADP1

79.375

99.105

0.787