Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   R3L12_RS11090 Genome accession   NZ_CP137057
Coordinates   2334692..2335720 (-) Length   342 a.a.
NCBI ID   WP_149930037.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2329692..2340720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS11085 (R3L12_11065) pilX 2334027..2334695 (-) 669 WP_149930036.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  R3L12_RS11090 (R3L12_11070) comB 2334692..2335720 (-) 1029 WP_149930037.1 PilW family protein Machinery gene
  R3L12_RS11095 (R3L12_11075) pilV 2335721..2336257 (-) 537 WP_149930038.1 type IV pilus modification protein PilV Machinery gene
  R3L12_RS11100 (R3L12_11080) - 2336254..2336700 (-) 447 WP_149930039.1 Tfp pilus assembly protein FimT/FimU -
  R3L12_RS11105 (R3L12_11085) ispH 2336821..2337771 (-) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R3L12_RS11110 (R3L12_11090) gmk 2337907..2338530 (+) 624 WP_025095725.1 guanylate kinase -
  R3L12_RS11115 (R3L12_11095) rpoZ 2338599..2338880 (+) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37520.55 Da        Isoelectric Point: 7.8095

>NTDB_id=894470 R3L12_RS11090 WP_149930037.1 2334692..2335720(-) (comB) [Acinetobacter soli strain SNUBHAB0075]
MTRLHQAGFTLIELMVAITLGLLITAAAIQLYLTSITSFNVQKAMSNIQDSASFGVNYILEDVRKANLSASSAYINDQQA
NAGLLLTQDNVGIKQSNGQNILEDNDLTRSGGGFSNVNSSNLEGSDQLTIRYSPNQIGYDCTGGEIALSDLKLLKGNTIL
GDRNLQIIQRYKVHINGALTCRAMRYYPDEDFNSKGLLIVGKKVPTWNLNGEQIIIPSVDYMRIKVGYVKGALNNPTALN
YVSVADYLDTAKTPTMTKNIDGISQQIKPYINVIQIGLLVQSNETAGNDVNVRNRNKKTFDVLGQSVALNSTNQDTRLRQ
VVTQTISLRNAMGWVEEGYVTQ

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=894470 R3L12_RS11090 WP_149930037.1 2334692..2335720(-) (comB) [Acinetobacter soli strain SNUBHAB0075]
ATGACCCGATTACATCAGGCCGGATTTACACTAATTGAACTGATGGTAGCCATTACGCTGGGGCTTTTGATTACAGCGGC
AGCCATTCAGCTGTACCTTACTAGTATCACCAGTTTTAATGTGCAAAAAGCCATGTCGAATATTCAAGACAGTGCCAGTT
TTGGGGTGAACTATATTTTAGAAGATGTTCGTAAGGCTAATTTGAGCGCATCGTCTGCATATATCAACGATCAACAAGCA
AATGCGGGATTATTATTAACGCAAGATAATGTTGGAATAAAACAATCAAATGGTCAAAATATACTAGAGGATAATGATTT
AACTAGGAGTGGTGGAGGATTTTCAAATGTAAATAGTTCCAATCTAGAAGGCAGTGATCAATTAACTATAAGATATAGTC
CGAATCAGATTGGTTATGATTGTACTGGTGGAGAAATAGCTTTAAGTGACTTAAAGTTATTAAAAGGTAATACAATCCTT
GGCGACAGAAATTTACAAATTATTCAGAGATATAAAGTACATATTAATGGAGCTCTAACGTGCAGAGCGATGCGTTATTA
TCCCGATGAAGATTTTAATAGTAAAGGCTTGCTTATAGTTGGAAAGAAAGTACCAACATGGAACTTAAATGGTGAGCAAA
TTATTATTCCCTCGGTCGATTATATGCGCATTAAAGTGGGTTATGTGAAAGGCGCTTTGAATAATCCAACAGCGCTCAAT
TACGTGTCTGTAGCAGATTATCTCGACACCGCAAAAACACCCACAATGACCAAAAATATTGATGGTATCTCACAGCAGAT
CAAGCCATACATCAATGTGATTCAAATTGGCTTACTGGTGCAGTCGAATGAAACAGCAGGCAATGATGTAAACGTTAGAA
ATCGTAATAAAAAGACTTTTGATGTGTTGGGGCAGTCGGTTGCATTAAACAGTACAAATCAAGATACACGATTGCGTCAG
GTAGTGACTCAGACCATTTCATTAAGAAATGCCATGGGTTGGGTGGAAGAGGGGTATGTCACACAATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(212-330)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Acinetobacter baylyi ADP1

62.573

100

0.626