Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   R3L12_RS11085 Genome accession   NZ_CP137057
Coordinates   2334027..2334695 (-) Length   222 a.a.
NCBI ID   WP_149930036.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2329027..2339695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS11075 (R3L12_11055) comE 2329112..2329582 (-) 471 WP_406626456.1 type IV pilin protein Machinery gene
  R3L12_RS11080 (R3L12_11060) comC 2329648..2334009 (-) 4362 WP_348889583.1 PilC/PilY family type IV pilus protein Machinery gene
  R3L12_RS11085 (R3L12_11065) pilX 2334027..2334695 (-) 669 WP_149930036.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  R3L12_RS11090 (R3L12_11070) comB 2334692..2335720 (-) 1029 WP_149930037.1 PilW family protein Machinery gene
  R3L12_RS11095 (R3L12_11075) pilV 2335721..2336257 (-) 537 WP_149930038.1 type IV pilus modification protein PilV Machinery gene
  R3L12_RS11100 (R3L12_11080) - 2336254..2336700 (-) 447 WP_149930039.1 Tfp pilus assembly protein FimT/FimU -
  R3L12_RS11105 (R3L12_11085) ispH 2336821..2337771 (-) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R3L12_RS11110 (R3L12_11090) gmk 2337907..2338530 (+) 624 WP_025095725.1 guanylate kinase -
  R3L12_RS11115 (R3L12_11095) rpoZ 2338599..2338880 (+) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23849.18 Da        Isoelectric Point: 8.4716

>NTDB_id=894469 R3L12_RS11085 WP_149930036.1 2334027..2334695(-) (pilX) [Acinetobacter soli strain SNUBHAB0075]
MKTNQQGATLIVVLMILLLIMVVGTLAIRQSVSSLKMVANNQIQALLLQNSDAALMYFQNPVNTSTLASANGVVNYFRNV
GNLNQEMVSCFNKTAPFVMSNMGVVNSSGTVDNQASCKSTDAAGGRTQVVTQVYIKKAASSDNQPFADYARGTDITTAKT
ESSLRLQLTSVSVMTGFSSAENIDNCLNKSASSAISCLSQKQVLFNSQVAEYRFLSDFEPPK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=894469 R3L12_RS11085 WP_149930036.1 2334027..2334695(-) (pilX) [Acinetobacter soli strain SNUBHAB0075]
ATGAAAACCAATCAACAAGGTGCAACCCTGATCGTGGTGCTGATGATTTTACTCTTGATCATGGTGGTGGGAACTTTGGC
CATCCGGCAAAGTGTCAGCTCGCTCAAAATGGTTGCAAATAATCAGATTCAGGCTTTATTGCTACAAAATTCGGATGCTG
CCCTGATGTATTTTCAAAATCCTGTGAATACCAGTACCTTGGCTTCTGCAAATGGTGTCGTTAATTATTTTCGTAATGTC
GGTAATCTTAATCAGGAAATGGTGAGCTGCTTTAATAAGACAGCGCCGTTTGTGATGAGCAATATGGGTGTGGTCAATAG
TTCAGGCACGGTCGATAACCAAGCCTCATGTAAAAGTACCGATGCTGCGGGTGGGCGCACGCAGGTGGTTACACAGGTGT
ATATCAAAAAGGCAGCATCATCGGACAATCAGCCATTTGCTGACTATGCGCGTGGTACCGATATCACCACTGCAAAAACG
GAAAGCAGTTTACGCCTACAACTGACTTCAGTTTCTGTCATGACCGGATTTTCATCTGCCGAAAATATCGATAACTGTTT
GAATAAATCGGCCAGCAGTGCCATCAGTTGTTTGAGTCAGAAGCAGGTCTTGTTTAATTCACAAGTGGCCGAGTATCGCT
TCTTATCTGACTTTGAGCCACCTAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

78.378

100

0.784