Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   R3L12_RS11075 Genome accession   NZ_CP137057
Coordinates   2329112..2329582 (-) Length   156 a.a.
NCBI ID   WP_406626456.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2324112..2334582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS11040 (R3L12_11020) - 2324138..2325175 (+) 1038 WP_004945041.1 lipase secretion chaperone -
  R3L12_RS11045 (R3L12_11025) - 2325308..2326279 (+) 972 WP_149930033.1 triacylglycerol lipase -
  R3L12_RS11050 (R3L12_11030) rplS 2326346..2326717 (-) 372 WP_004934323.1 50S ribosomal protein L19 -
  R3L12_RS11055 (R3L12_11035) trmD 2326927..2327661 (-) 735 WP_004934319.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  R3L12_RS11060 (R3L12_11040) rimM 2327710..2328258 (-) 549 WP_004934317.1 ribosome maturation factor RimM -
  R3L12_RS11065 (R3L12_11045) rpsP 2328276..2328533 (-) 258 WP_004934313.1 30S ribosomal protein S16 -
  R3L12_RS11070 (R3L12_11050) comF 2328675..2329118 (-) 444 WP_149930034.1 type IV pilin protein Machinery gene
  R3L12_RS11075 (R3L12_11055) comE 2329112..2329582 (-) 471 WP_406626456.1 type IV pilin protein Machinery gene
  R3L12_RS11080 (R3L12_11060) comC 2329648..2334009 (-) 4362 WP_348889583.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17028.26 Da        Isoelectric Point: 8.4392

>NTDB_id=894467 R3L12_RS11075 WP_406626456.1 2329112..2329582(-) (comE) [Acinetobacter soli strain SNUBHAB0075]
MSLSTQGFTLIELMVVVVMIAIVATIAIPSYQEYVRRSNLAAAQQEMQKIAALLERHRSRNFSYSGFALKGTAESKGPYY
DVANASDTALLLPLNSSSGSQKYKLNLSLDTSTNSWTIVANSQDPLNYSLRTTSSGESCKKKASSITNCNEGTEIW

Nucleotide


Download         Length: 471 bp        

>NTDB_id=894467 R3L12_RS11075 WP_406626456.1 2329112..2329582(-) (comE) [Acinetobacter soli strain SNUBHAB0075]
ATGTCGCTTAGCACGCAAGGGTTTACCTTAATTGAGCTGATGGTGGTCGTGGTCATGATTGCCATTGTTGCCACCATTGC
GATTCCGAGTTATCAGGAATATGTCCGTCGCTCTAATCTGGCAGCGGCACAGCAAGAAATGCAGAAAATTGCAGCCTTGC
TAGAACGACATCGTTCACGTAACTTTAGTTATTCAGGCTTTGCCTTAAAAGGAACAGCCGAGAGTAAAGGGCCTTATTAC
GATGTCGCGAATGCGAGCGATACCGCTTTACTATTGCCATTAAACAGTAGCAGTGGGTCGCAAAAATACAAATTAAATCT
GAGTTTAGATACATCAACTAATTCCTGGACAATAGTAGCTAATAGTCAAGATCCACTAAATTATTCATTGCGCACGACAA
GTAGTGGCGAGAGTTGTAAGAAAAAAGCATCTAGCATTACAAACTGTAATGAAGGTACAGAGATATGGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

50

100

0.551
  pilY2 Acinetobacter baumannii D1279779

38.926

95.513

0.372