Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AAFU62_RS08240 Genome accession   NZ_CP154891
Coordinates   1701954..1702667 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 318231     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1696954..1707667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFU62_RS08230 (AAFU62_08230) treC 1698026..1699654 (-) 1629 WP_053308668.1 alpha,alpha-phosphotrehalase -
  AAFU62_RS08235 (AAFU62_08235) treP 1699722..1701743 (-) 2022 WP_136268348.1 PTS system trehalose-specific EIIBC component -
  AAFU62_RS08240 (AAFU62_08240) treR 1701954..1702667 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  AAFU62_RS08245 (AAFU62_08245) - 1702947..1703285 (-) 339 Protein_1562 helix-turn-helix domain-containing protein -
  AAFU62_RS08250 (AAFU62_08250) - 1703471..1704328 (+) 858 WP_111711508.1 VOC family protein -
  AAFU62_RS08255 (AAFU62_08255) yaaA 1704370..1705101 (+) 732 WP_111718025.1 peroxide stress protein YaaA -
  AAFU62_RS08260 (AAFU62_08260) nrdG 1705275..1705889 (-) 615 WP_021775544.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  AAFU62_RS08265 (AAFU62_08265) - 1705904..1706398 (-) 495 WP_014407930.1 GNAT family N-acetyltransferase -
  AAFU62_RS08270 (AAFU62_08270) - 1706407..1707342 (-) 936 WP_136268349.1 Gfo/Idh/MocA family oxidoreductase -
  AAFU62_RS08275 (AAFU62_08275) - 1707371..1707517 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=894323 AAFU62_RS08240 WP_002982243.1 1701954..1702667(+) (treR) [Streptococcus pyogenes strain 318231]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=894323 AAFU62_RS08240 WP_002982243.1 1701954..1702667(+) (treR) [Streptococcus pyogenes strain 318231]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACTAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGCTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTCGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679