Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   AAFU62_RS02625 Genome accession   NZ_CP154891
Coordinates   516134..516799 (+) Length   221 a.a.
NCBI ID   WP_136268378.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 318231     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511134..521799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFU62_RS02600 (AAFU62_02600) - 511286..512686 (+) 1401 WP_136268377.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  AAFU62_RS02605 (AAFU62_02605) - 512686..513063 (+) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  AAFU62_RS02610 (AAFU62_02610) cysK 513081..514022 (-) 942 WP_009880467.1 cysteine synthase A -
  AAFU62_RS02615 (AAFU62_02615) - 514150..514782 (-) 633 WP_032465870.1 YigZ family protein -
  AAFU62_RS02620 (AAFU62_02620) - 514838..516162 (+) 1325 Protein_463 DEAD/DEAH box helicase -
  AAFU62_RS02625 (AAFU62_02625) comFC/cflB 516134..516799 (+) 666 WP_136268378.1 ComF family protein Machinery gene
  AAFU62_RS02630 (AAFU62_02630) raiA 516879..517427 (+) 549 WP_002988974.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25203.52 Da        Isoelectric Point: 9.4626

>NTDB_id=894279 AAFU62_RS02625 WP_136268378.1 516134..516799(+) (comFC/cflB) [Streptococcus pyogenes strain 318231]
MICLLCQQISQIPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCVNSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=894279 AAFU62_RS02625 WP_136268378.1 516134..516799(+) (comFC/cflB) [Streptococcus pyogenes strain 318231]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAATACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGTAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae Rx1

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae D39

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae R6

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

41.176

100

0.412