Detailed information NTG0894231

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: R2X36_RS19025
• Genome accession: NZ_CP137009
• Coordinates: 4107642..4108514 (+)
• Length: 290 a.a.
• NCBI ID: WP_042649027.1
• Uniprot ID: -
• Organism: Aeromonas media strain QST31
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4102642..4113514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R2X36_RS19005 (R2X36_19005)	nadC	4102861..4103724 (+)	864	WP_317841574.1	carboxylating nicotinate-nucleotide diphosphorylase	-
R2X36_RS19010 (R2X36_19010)	-	4104037..4104480 (+)	444	WP_317841575.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
R2X36_RS19015 (R2X36_19015)	pilB	4104484..4106190 (+)	1707	WP_218410023.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
R2X36_RS19020 (R2X36_19020)	pilC	4106320..4107561 (+)	1242	WP_043133310.1	type II secretion system F family protein	Machinery gene
R2X36_RS19025 (R2X36_19025)	pilD	4107642..4108514 (+)	873	WP_042649027.1	A24 family peptidase	Machinery gene
R2X36_RS19030 (R2X36_19030)	coaE	4108533..4109147 (+)	615	WP_317841576.1	dephospho-CoA kinase	-
R2X36_RS19035 (R2X36_19035)	zapD	4109185..4109907 (+)	723	WP_226170498.1	cell division protein ZapD	-
R2X36_RS19040 (R2X36_19040)	yacG	4109917..4110111 (+)	195	WP_042649030.1	DNA gyrase inhibitor YacG	-
R2X36_RS19045 (R2X36_19045)	mutT	4110187..4110591 (-)	405	WP_005332118.1	8-oxo-dGTP diphosphatase MutT	-
R2X36_RS19050 (R2X36_19050)	secA	4110747..4113467 (-)	2721	WP_317841577.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32052.32 Da
• Isoelectric Point: 7.0918

>NTDB_id=894231 R2X36_RS19025 WP_042649027.1 4107642..4108514(+) (pilD) [Aeromonas media strain QST31]
MVPLIELAQGLPWLYLSLIFLFSLMIGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=894231 R2X36_RS19025 WP_042649027.1 4107642..4108514(+) (pilD) [Aeromonas media strain QST31]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGATTGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTACCGCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCACTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGCTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATCTGGCCGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGAATGGGTCATG
GCGACTTCAAGCTGCTGGCGGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCTTCACTG
GTCGGCGCCATCATTGGGATCGGACTTATCCTGCTGCGTAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTACCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.404	98.276	0.603
pilD	Vibrio campbellii strain DS40M4	56.055	99.655	0.559
pilD	Acinetobacter nosocomialis M2	52.518	95.862	0.503
pilD	Acinetobacter baumannii D1279779	52.158	95.862	0.5
pilD	Neisseria gonorrhoeae MS11	49.049	90.69	0.445