Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R2X36_RS01925 Genome accession   NZ_CP137009
Coordinates   389477..390052 (-) Length   191 a.a.
NCBI ID   WP_005328769.1    Uniprot ID   -
Organism   Aeromonas media strain QST31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 384477..395052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2X36_RS01895 (R2X36_01895) - 384795..385517 (+) 723 WP_025328561.1 response regulator -
  R2X36_RS01900 (R2X36_01900) - 385525..386910 (+) 1386 WP_317841821.1 ATP-binding protein -
  R2X36_RS01905 (R2X36_01905) cspA 387148..387360 (-) 213 WP_025328559.1 RNA chaperone/antiterminator CspA -
  R2X36_RS01910 (R2X36_01910) yjbD 387754..388038 (-) 285 WP_025328558.1 DUF3811 domain-containing protein -
  R2X36_RS01915 (R2X36_01915) - 388379..388501 (+) 123 WP_081843838.1 hypothetical protein -
  R2X36_RS01920 (R2X36_01920) - 388550..389320 (-) 771 WP_005328770.1 ABC transporter substrate-binding protein -
  R2X36_RS01925 (R2X36_01925) ssb 389477..390052 (-) 576 WP_005328769.1 single-stranded DNA-binding protein Machinery gene
  R2X36_RS01930 (R2X36_01930) - 390569..391207 (+) 639 WP_139750669.1 LuxR C-terminal-related transcriptional regulator -
  R2X36_RS01935 (R2X36_01935) uvrA 391302..394130 (+) 2829 WP_005328767.1 excinuclease ABC subunit UvrA -
  R2X36_RS01940 (R2X36_01940) - 394317..394442 (-) 126 WP_005328766.1 hypothetical protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=894209 R2X36_RS01925 WP_005328769.1 389477..390052(-) (ssb) [Aeromonas media strain QST31]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=894209 R2X36_RS01925 WP_005328769.1 389477..390052(-) (ssb) [Aeromonas media strain QST31]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGTTGCAGACCCGCAAGTGGCAGGATCAGAGTGGTCAGGAGCGCTACACCACAGAGGTGCTGGTCGACAGTTT
CACCGGCGTGATGCAAATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAGGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGATGA
CGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.744

100

0.712
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45