Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R0Q54_RS10420 Genome accession   NZ_CP136992
Coordinates   1945726..1946244 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain J46     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1940726..1951244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS10390 (R0Q54_10390) yyaJ 1941230..1942585 (+) 1356 WP_041337895.1 MFS transporter -
  R0Q54_RS10395 (R0Q54_10395) maa 1942619..1943173 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  R0Q54_RS10400 (R0Q54_10400) yyaH 1943191..1943571 (-) 381 WP_003244460.1 VOC family protein -
  R0Q54_RS10405 (R0Q54_10405) ccpB 1943627..1944562 (-) 936 WP_069964447.1 transcriptional regulator CcpB -
  R0Q54_RS10410 (R0Q54_10410) xth 1944622..1945380 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  R0Q54_RS10415 (R0Q54_10415) rpsR 1945443..1945682 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  R0Q54_RS10420 (R0Q54_10420) ssbA 1945726..1946244 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  R0Q54_RS10425 (R0Q54_10425) rpsF 1946285..1946572 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  R0Q54_RS10430 (R0Q54_10430) ychF 1946683..1947783 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  R0Q54_RS10435 (R0Q54_10435) yyaE 1947910..1949913 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  R0Q54_RS10440 (R0Q54_10440) yyzM 1949964..1950170 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=894050 R0Q54_RS10420 WP_003219228.1 1945726..1946244(-) (ssbA) [Bacillus subtilis strain J46]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=894050 R0Q54_RS10420 WP_003219228.1 1945726..1946244(-) (ssbA) [Bacillus subtilis strain J46]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378