Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R3J34_RS06920 Genome accession   NZ_CP136975
Coordinates   1450315..1450809 (-) Length   164 a.a.
NCBI ID   WP_004083791.1    Uniprot ID   Q9PDI7
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8070     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1445315..1455809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J34_RS06905 (R3J34_06875) gloA 1445610..1446137 (+) 528 WP_154415420.1 lactoylglutathione lyase -
  R3J34_RS06910 (R3J34_06880) - 1446299..1447495 (-) 1197 WP_027700010.1 cation:proton antiporter -
  R3J34_RS06915 (R3J34_06885) - 1447808..1448718 (-) 911 Protein_1346 class I SAM-dependent methyltransferase -
  R3J34_RS06920 (R3J34_06890) ssb 1450315..1450809 (-) 495 WP_004083791.1 single-stranded DNA-binding protein Machinery gene
  R3J34_RS06925 (R3J34_06895) - 1451058..1452059 (+) 1002 WP_004083792.1 polyprenyl synthetase family protein -
  R3J34_RS06930 (R3J34_06900) cyoA 1452522..1453481 (+) 960 WP_145510379.1 ubiquinol oxidase subunit II -
  R3J34_RS06935 (R3J34_06905) cyoB 1453475..1455472 (+) 1998 WP_004083794.1 cytochrome o ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18211.20 Da        Isoelectric Point: 5.9575

>NTDB_id=893964 R3J34_RS06920 WP_004083791.1 1450315..1450809(-) (ssb) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=893964 R3J34_RS06920 WP_004083791.1 1450315..1450809(-) (ssb) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PDI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433