Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AAG092_RS12455 Genome accession   NZ_CP154874
Coordinates   2561381..2563456 (-) Length   691 a.a.
NCBI ID   WP_373386932.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2556381..2568456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS12425 (AAG092_12355) - 2557057..2557605 (-) 549 WP_373386929.1 chorismate lyase -
  AAG092_RS12430 (AAG092_12360) - 2557785..2557952 (+) 168 WP_068827612.1 rubredoxin -
  AAG092_RS12435 (AAG092_12365) - 2558233..2558505 (+) 273 WP_021702152.1 HU family DNA-binding protein -
  AAG092_RS12440 (AAG092_12370) - 2558641..2559039 (+) 399 WP_373386930.1 helicase -
  AAG092_RS12445 (AAG092_12375) - 2559100..2559822 (+) 723 WP_373386931.1 hypothetical protein -
  AAG092_RS12450 (AAG092_12380) - 2559868..2561277 (-) 1410 WP_110682748.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  AAG092_RS12455 (AAG092_12385) recG 2561381..2563456 (-) 2076 WP_373386932.1 ATP-dependent DNA helicase RecG Machinery gene
  AAG092_RS12460 (AAG092_12390) - 2563453..2564385 (-) 933 WP_373386933.1 hydrogen peroxide-inducible genes activator -
  AAG092_RS12465 (AAG092_12395) - 2564480..2565178 (-) 699 WP_373386934.1 TonB family protein -
  AAG092_RS12470 (AAG092_12400) exbD 2565175..2565600 (-) 426 WP_110682752.1 TonB system transport protein ExbD -
  AAG092_RS12475 (AAG092_12405) exbB 2565604..2566683 (-) 1080 WP_373386935.1 tonB-system energizer ExbB -
  AAG092_RS12480 (AAG092_12410) - 2566856..2567728 (+) 873 WP_110682754.1 SDR family oxidoreductase -
  AAG092_RS12485 (AAG092_12415) - 2567704..2568069 (-) 366 WP_373386936.1 hypothetical protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76129.72 Da        Isoelectric Point: 6.9903

>NTDB_id=893892 AAG092_RS12455 WP_373386932.1 2561381..2563456(-) (recG) [Pseudomonas alcaligenes strain Med1]
MTELAQVPVTALKGVGEALAEKLAKVGLENLQDVLFHLPLRYQDRTRITPIGALRPGQDAVVEGVVGGADIVMGRRRSLL
VRLQDGSGTLSLRFFHFSQAQKDGLKRGTALRCYGEVRPGATGLEIYHPEYRAVSGDEPAPVEQTLTPIYPTTEGLTQQR
LRTLSQQALARLGPHSLPDWLPAELARDYRLGPLDEAIRYLHRPPPDADVEELAEGRHWAQHRLAFEELLTHQLSLQRLR
EQVRAQQAPALPKAQALPQRFLANLGFAPTGAQQRVGAEIAYDLSQSEPMLRLVQGDVGAGKTVVAALAALQALEAGYQV
ALMAPTEILAEQHFLNFSRWLQPLGIEVAWLAGKLKGKARAAALEQIAGGCPMVVGTHALFQDEVRFSKLALVIIDEQHR
FGVQQRLALRQKGIDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTILVADSRRLEVVERVRAACRE
GRQAYWVCTLIEESEELTCQAAETSFEELSAALGELRVGLIHGRMKPAEKAAVMDQFKRGELQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHAPLSQLGRERLGIMRETCDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVREAAQELLARWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=893892 AAG092_RS12455 WP_373386932.1 2561381..2563456(-) (recG) [Pseudomonas alcaligenes strain Med1]
ATGACCGAGCTGGCGCAGGTCCCGGTCACCGCGCTGAAGGGCGTGGGTGAGGCGCTGGCCGAAAAGCTGGCCAAGGTCGG
CCTGGAAAACCTGCAGGACGTGCTGTTCCACCTGCCACTGCGCTACCAGGACCGCACCCGCATCACCCCGATCGGCGCGC
TGCGCCCAGGGCAGGATGCGGTGGTCGAAGGCGTGGTCGGCGGCGCCGACATCGTCATGGGCCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGATGGCAGCGGCACCCTGTCCCTGCGCTTCTTCCACTTCAGCCAGGCGCAGAAGGACGGCCTCAAGCG
CGGCACCGCGCTGCGCTGCTACGGCGAGGTACGCCCCGGCGCCACCGGCCTGGAGATCTACCACCCGGAATACCGCGCGG
TCAGCGGCGACGAGCCGGCGCCGGTGGAACAGACCCTGACGCCCATCTACCCGACCACCGAGGGCCTCACCCAGCAGCGC
CTGCGCACCCTCAGCCAGCAGGCCCTGGCCCGCCTCGGCCCGCACAGCCTGCCGGACTGGCTGCCGGCCGAACTGGCCCG
CGACTACCGCCTCGGCCCACTGGACGAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGATGTGGAGGAACTGG
CCGAGGGCCGCCACTGGGCCCAGCACCGCCTGGCCTTCGAGGAACTGCTGACCCACCAGCTGTCGCTGCAGCGCCTGCGC
GAGCAGGTGCGCGCGCAGCAGGCGCCGGCCCTGCCGAAGGCGCAGGCGCTGCCGCAGCGCTTCCTCGCCAACCTCGGCTT
CGCCCCCACCGGCGCGCAGCAGCGGGTCGGCGCCGAGATCGCCTACGACCTCAGCCAGAGCGAGCCGATGCTGCGCCTGG
TGCAGGGCGACGTCGGTGCGGGCAAGACCGTGGTGGCGGCACTCGCCGCCCTGCAGGCGCTGGAGGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTTGCCGAGCAGCACTTCCTCAACTTCAGCAGGTGGCTGCAGCCGCTGGGCATCGA
GGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCCGCGGCCCTGGAACAGATCGCCGGTGGCTGCCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGACGAGGTGCGCTTTTCCAAGCTAGCGCTGGTGATCATCGACGAGCAGCACCGT
TTCGGCGTGCAGCAGCGCCTGGCGCTGCGGCAGAAGGGCATCGACGGCCGCCTCTGCCCGCACCAGCTGATCATGACCGC
CACGCCGATCCCGCGAACCCTGGCGATGAGCGCCTACGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GCACGCCGGTGAACACTATCCTGGTGGCCGACAGCCGCCGCCTCGAGGTGGTCGAGCGGGTCCGCGCCGCCTGCCGCGAG
GGGCGCCAGGCCTACTGGGTGTGCACGCTGATCGAGGAATCCGAGGAACTCACCTGCCAGGCCGCCGAGACCAGCTTCGA
GGAGCTCTCCGCGGCGCTGGGCGAGCTGCGCGTCGGCCTGATCCACGGGCGCATGAAGCCGGCCGAGAAGGCTGCGGTGA
TGGACCAGTTCAAGCGCGGCGAGCTGCAGCTGCTGGTCGCCACCACGGTGATCGAGGTGGGTGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTGGGCCTGGCCCAGCTGCACCAGCTGCGCGGACGGGTCGGCCGCGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACGCGCCGCTGTCGCAGCTCGGCCGCGAGCGCCTGGGGATCATGCGCGAGA
CCTGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAACTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAGTTCAAGGTCGCCGACCTGATGCGCGATGCCGACCTGCTGCCGGCCGTGCGCGAGGCCGCGCAGGAGCTGCT
GGCGCGCTGGCCGCAGCACGTCAGCCCGCTGCTGGAGCGCTGGCTGCGCCACGGCCAGCAGTACGGCCAAGTGTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-169)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

DEAD/DEAH box helicase (DEAD)

(293-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.888

97.829

0.498
  recG/mmsA Streptococcus pneumoniae R6

41.654

96.237

0.401
  recG/mmsA Streptococcus pneumoniae R36A

41.654

96.237

0.401
  recG Bacillus subtilis subsp. subtilis str. 168

39.971

98.119

0.392