Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   AAG092_RS10990 Genome accession   NZ_CP154874
Coordinates   2256294..2259854 (-) Length   1186 a.a.
NCBI ID   WP_373386690.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251294..2264854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS10970 (AAG092_10910) - 2251350..2253005 (-) 1656 WP_373386685.1 AAA family ATPase -
  AAG092_RS10975 (AAG092_10915) - 2253009..2253761 (-) 753 WP_373386686.1 PspA/IM30 family protein -
  AAG092_RS10980 (AAG092_10920) - 2253886..2254326 (-) 441 WP_373386688.1 hypothetical protein -
  AAG092_RS10985 (AAG092_10925) recD 2254334..2256169 (-) 1836 WP_373386689.1 exodeoxyribonuclease V subunit alpha -
  AAG092_RS10990 (AAG092_10930) recB 2256294..2259854 (-) 3561 WP_373386690.1 exodeoxyribonuclease V subunit beta Machinery gene
  AAG092_RS10995 (AAG092_10935) recC 2259851..2263108 (-) 3258 WP_373386691.1 exodeoxyribonuclease V subunit gamma -
  AAG092_RS11000 (AAG092_10940) pilU 2263206..2264324 (+) 1119 WP_373386692.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AAG092_RS11005 (AAG092_10945) - 2264408..2264701 (+) 294 WP_373386694.1 hypothetical protein -

Sequence

Protein


Download         Length: 1186 a.a.        Molecular weight: 130315.40 Da        Isoelectric Point: 5.0942

>NTDB_id=893881 AAG092_RS10990 WP_373386690.1 2256294..2259854(-) (recB) [Pseudomonas alcaligenes strain Med1]
MNDLNLHDSPFTGRSLIEASAGTGKTWTLTALYARLLLERELSVGQILVVTYTTAATAELRERIRARLAELLALYEGGES
DDGFLVELHRRHPGEAARRRLLLAVHGFDEAAIFTIHGFCQRALQDSAFEAGGDFDAELTQDDREVLDALLGDAWRHVLA
GADPAWARYLAKQKVTPATLRQALRSHLGKPYLQVEPRVEPRERVGEAELQAASAAWQAAAELWRAEGYAWVEVLREHGG
LSQSTHKAAKLPLWSAELDAYFADPAALFEAPDGLAKLGAAALLKATKKNFEAPHSALAEALDVLGAALESALPAGKQKL
IALQVELLDRLNVELPQRKAAQRLLAFDDLLNNLDQALHSAAGDDLAARLREQYPLALIDEFQDTDPIQYAIFDRVYRDG
GDLCFVGDPKQAIYAFRGADLATYLQARDAAERQYDLPFNYRSTPALIKALNQLFARPQPFAEEGLSYPPVSAGQKARAT
LVLPEQDGAAPLGLVWLGDEGLNKARAGELAALDTARRIAALLAASAQDKAYFEDDGGRKPLKGGDIAVLVSNHREAASV
AAELAARGVPSVRRGRDSVWHSEEAAELAAVLAAYAEPGREGVLRYALATRLLGRDAAQIARCQEVEQEWDRERAAAEQY
HQLWQQQGFMRVFRAWLDQERVAERLLAGIDGERRLTNLLHLGELLQAESLQRPGLEPLLAWFAAQRGSEGAGEDALLRL
ESDAERVQIVTIHTSKGLEYPLVFCPFLWDGRLLGQHTDSARCHDEQGQPLLDLGSDRLGEHLQAARRESFAEKLRLTYV
ALTRAEHRLWLHWGAVALPKPNQKTGKLPDEGLHSSALAWLLHGRELPGEDALGELATYLAGQEGPDLAAELDELAGSSA
GLIARLAPLTEEAQAAGTGRAEPPQDQQLFERSLHSAWRIGSFSGLAAGMHMEAPDHDALALVDASEPGAGFFAFPRGAR
AGTCLHAILEDWMRGKGSLEQLVPPALQEHGIDAELWGAIAIAQLQAVLDTDLDGQGLRLSTLQANQRLPELGFTFPVER
LNVERLRALLADPAFGLPESMRQAAERLQFDELKGYLKGFIDLTFEHAGRWYILDYKSNWLGPTAAHYGAERLEQAIAAE
HYHLQYLIYLVALRRFLRTRLADFRDAQLGGAWYLFLRGMPAAGVYFARPADSLLDALDKLFTEAK

Nucleotide


Download         Length: 3561 bp        

>NTDB_id=893881 AAG092_RS10990 WP_373386690.1 2256294..2259854(-) (recB) [Pseudomonas alcaligenes strain Med1]
ATGAACGACCTCAATCTGCACGACTCGCCGTTCACTGGCCGCTCGCTGATCGAGGCCAGCGCCGGTACCGGCAAGACCTG
GACCCTGACCGCGCTGTACGCGCGCCTGCTGCTGGAGCGCGAGCTGTCGGTCGGGCAGATCCTGGTGGTCACCTACACCA
CCGCGGCGACGGCCGAGCTGCGCGAGCGTATCCGCGCCCGTCTGGCCGAATTGCTGGCGCTCTACGAGGGTGGCGAGAGC
GATGACGGTTTCCTTGTCGAGCTGCACCGCCGCCATCCCGGCGAAGCGGCACGGCGGCGCCTGCTGCTGGCCGTGCATGG
CTTCGACGAGGCGGCCATCTTCACCATTCACGGCTTCTGCCAGCGCGCCCTGCAGGACTCTGCCTTCGAGGCCGGTGGCG
ACTTCGACGCTGAGCTGACCCAGGACGACCGCGAAGTGCTCGACGCCCTGCTCGGCGACGCCTGGCGCCATGTGCTGGCC
GGCGCCGACCCGGCCTGGGCGCGCTACCTGGCCAAGCAGAAAGTCACCCCCGCGACTTTGCGCCAGGCCCTGCGCAGCCA
CCTGGGCAAGCCCTATCTACAAGTAGAACCGCGCGTCGAGCCACGCGAGCGCGTGGGCGAGGCCGAGCTGCAGGCCGCCA
GCGCCGCCTGGCAGGCCGCCGCCGAGCTGTGGCGCGCCGAGGGTTACGCCTGGGTCGAGGTGCTGCGCGAGCACGGCGGC
CTCAGCCAGAGCACGCACAAGGCGGCCAAGCTGCCGCTGTGGTCGGCCGAGCTGGACGCCTATTTCGCCGACCCGGCGGC
GCTGTTCGAGGCGCCGGACGGCCTGGCCAAGCTGGGCGCCGCCGCCCTGCTCAAGGCCACCAAGAAGAATTTCGAGGCGC
CGCACAGCGCGCTGGCCGAGGCCCTGGATGTCCTTGGCGCGGCGCTGGAAAGCGCCCTGCCGGCCGGCAAGCAGAAGCTG
ATCGCCCTGCAGGTCGAGCTGCTCGACCGCCTCAACGTTGAGCTGCCGCAGCGCAAGGCGGCCCAGCGCCTGCTGGCCTT
CGACGACCTGCTCAACAACCTCGACCAGGCGCTGCACAGCGCGGCTGGCGACGATCTGGCCGCGCGCCTGCGCGAGCAGT
ACCCGCTGGCGCTGATCGACGAGTTCCAGGACACCGACCCGATCCAGTACGCCATCTTCGACCGGGTCTACCGCGATGGC
GGTGACCTGTGTTTCGTAGGCGACCCCAAGCAGGCCATTTATGCCTTCCGCGGCGCAGACCTGGCCACCTACCTGCAGGC
TCGCGACGCAGCCGAGCGGCAGTACGACCTGCCCTTCAACTACCGCTCCACCCCCGCGCTGATCAAGGCGCTGAACCAAC
TGTTCGCCCGCCCGCAGCCCTTCGCCGAGGAAGGGCTGAGCTACCCGCCGGTCAGCGCCGGCCAGAAGGCGCGCGCCACG
CTGGTGCTGCCCGAGCAGGACGGCGCCGCGCCGCTGGGCCTGGTCTGGCTCGGTGACGAGGGGCTGAACAAGGCGCGTGC
CGGCGAGCTGGCGGCGCTGGATACGGCGCGGCGGATCGCCGCGCTGCTCGCCGCCAGCGCGCAGGATAAGGCCTATTTCG
AAGACGATGGCGGCAGAAAGCCGCTGAAAGGTGGCGATATCGCCGTGCTGGTCAGCAACCACCGCGAGGCCGCCAGTGTT
GCCGCCGAGCTGGCCGCGCGCGGCGTGCCCAGCGTGCGCCGTGGCCGTGACAGCGTGTGGCATAGCGAAGAAGCCGCCGA
GCTGGCGGCGGTGCTGGCCGCCTATGCCGAGCCCGGCCGCGAGGGTGTGCTGCGCTATGCCCTGGCCACCCGCCTGCTAG
GTCGCGACGCGGCGCAGATTGCCCGTTGCCAGGAAGTCGAGCAGGAATGGGACCGCGAGCGCGCCGCCGCCGAGCAGTAC
CACCAGCTGTGGCAGCAGCAGGGCTTCATGCGCGTGTTCAGGGCCTGGCTGGACCAGGAGCGGGTGGCCGAGCGCCTGTT
GGCCGGCATCGACGGCGAGCGGCGGCTGACCAACCTGCTGCACCTGGGCGAGTTGCTGCAGGCCGAGAGCCTGCAGCGGC
CGGGGCTGGAGCCGCTGCTGGCCTGGTTCGCCGCCCAGCGCGGCAGCGAAGGCGCCGGCGAGGATGCCCTGCTGCGCCTG
GAAAGCGATGCCGAGCGGGTGCAGATCGTCACCATCCACACCTCCAAGGGCCTGGAATACCCGCTGGTGTTCTGCCCCTT
CCTGTGGGACGGCCGCTTGCTCGGCCAGCACACCGATAGTGCGCGCTGCCACGACGAGCAGGGTCAGCCGTTGCTCGATC
TGGGCAGTGATCGCTTGGGCGAACACTTGCAGGCGGCACGGCGCGAAAGCTTCGCCGAGAAGCTGCGCCTGACCTATGTG
GCTCTCACGCGAGCTGAGCATCGCCTATGGCTGCACTGGGGGGCGGTCGCGTTGCCCAAGCCGAATCAGAAGACCGGCAA
GCTGCCCGACGAGGGCCTGCACAGCAGCGCCCTGGCCTGGCTGCTGCACGGCCGCGAGCTGCCCGGCGAGGATGCCCTGG
GCGAGCTGGCCACTTATCTGGCGGGCCAGGAAGGCCCGGACCTGGCCGCCGAACTGGACGAGCTGGCCGGCAGCAGCGCC
GGCCTGATCGCCCGCCTCGCCCCGCTCACCGAGGAAGCCCAGGCCGCCGGCACGGGCCGCGCCGAGCCGCCCCAGGACCA
GCAGCTGTTCGAGCGCAGCCTTCATAGCGCCTGGCGCATCGGCAGCTTCTCGGGCCTGGCCGCCGGTATGCACATGGAAG
CGCCGGACCACGACGCCCTGGCCCTGGTCGATGCCAGCGAGCCGGGCGCCGGCTTCTTCGCCTTCCCGCGTGGCGCCCGC
GCCGGTACCTGCCTGCACGCCATCCTCGAAGACTGGATGCGCGGCAAGGGCAGCCTGGAGCAACTGGTACCGCCCGCTCT
GCAGGAACATGGCATCGACGCCGAGTTGTGGGGCGCGATCGCCATTGCCCAGCTGCAGGCGGTGCTGGACACCGACCTGG
ATGGCCAGGGCTTGCGTCTTTCAACGTTGCAGGCCAATCAGCGGCTGCCCGAGCTGGGCTTCACCTTTCCGGTCGAACGG
CTCAATGTAGAGCGCCTGCGCGCGCTGCTGGCCGACCCGGCCTTTGGCCTGCCCGAGTCCATGCGCCAGGCCGCCGAGCG
CCTGCAGTTCGACGAGCTGAAGGGCTACCTGAAGGGCTTTATCGACCTGACCTTCGAGCACGCCGGGCGCTGGTACATCC
TCGACTACAAGTCCAACTGGCTCGGCCCGACGGCCGCGCACTACGGCGCCGAGCGCCTGGAGCAGGCCATCGCCGCCGAG
CACTACCACCTGCAATACCTGATCTACCTGGTGGCGCTGCGGCGTTTCCTGCGCACGCGCCTGGCCGATTTCAGAGACGC
GCAGCTGGGCGGCGCCTGGTACCTGTTCCTGCGCGGCATGCCGGCGGCCGGGGTGTATTTCGCCCGCCCCGCCGACAGCC
TGCTGGATGCGCTGGATAAACTGTTCACGGAGGCGAAGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(960-1159)

UvrD-like helicase C-terminal domain (UvrD_C)

(721-813)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(11-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae MS11

35.241

100

0.363
  recB Neisseria gonorrhoeae strain FA1090

35.078

100

0.362