Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CYJ98_RS07055 Genome accession   NZ_CP136962
Coordinates   1522744..1523031 (-) Length   95 a.a.
NCBI ID   WP_317869910.1    Uniprot ID   A0AAF0YQ46
Organism   Neisseria perflava strain UMB0023     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1522067..1530106 1522744..1523031 within 0


Gene organization within MGE regions


Location: 1522067..1530106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS07050 (CYJ98_007050) comP 1522067..1522561 (-) 495 WP_167382852.1 type IV pilin protein Machinery gene
  CYJ98_RS07055 (CYJ98_007055) comE 1522744..1523031 (-) 288 WP_317869910.1 ComEA family DNA-binding protein Machinery gene
  CYJ98_RS07085 (CYJ98_007085) thrB 1529183..1530106 (+) 924 WP_101755950.1 homoserine kinase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9821.50 Da        Isoelectric Point: 10.4923

>NTDB_id=893793 CYJ98_RS07055 WP_317869910.1 1522744..1523031(-) (comE) [Neisseria perflava strain UMB0023]
MKKFLFGVFATVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=893793 CYJ98_RS07055 WP_317869910.1 1522744..1523031(-) (comE) [Neisseria perflava strain UMB0023]
ATGAAGAAATTTTTATTTGGTGTCTTTGCCACCGTGTGTACGGCATTCTCTTTGGCTGCCGTGAATGTCAATACGGCCTC
TTCTGCCGAGCTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAAGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCTGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474