Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   CYJ98_RS07050 Genome accession   NZ_CP136962
Coordinates   1522067..1522561 (-) Length   164 a.a.
NCBI ID   WP_167382852.1    Uniprot ID   A0AAF0YRL2
Organism   Neisseria perflava strain UMB0023     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1522067..1530106 1522067..1522561 within 0


Gene organization within MGE regions


Location: 1522067..1530106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS07050 (CYJ98_007050) comP 1522067..1522561 (-) 495 WP_167382852.1 type IV pilin protein Machinery gene
  CYJ98_RS07055 (CYJ98_007055) comE 1522744..1523031 (-) 288 WP_317869910.1 ComEA family DNA-binding protein Machinery gene
  CYJ98_RS07085 (CYJ98_007085) thrB 1529183..1530106 (+) 924 WP_101755950.1 homoserine kinase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18022.07 Da        Isoelectric Point: 10.1982

>NTDB_id=893792 CYJ98_RS07050 WP_167382852.1 1522067..1522561(-) (comP) [Neisseria perflava strain UMB0023]
MYLKTFVGKRNGATVQRGYSLIQLLVVILLVSILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTST
KWSELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKSKGSCTDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=893792 CYJ98_RS07050 WP_167382852.1 1522067..1522561(-) (comP) [Neisseria perflava strain UMB0023]
ATGTACTTAAAAACATTTGTTGGCAAACGGAATGGAGCAACTGTGCAGAGGGGGTACTCTTTGATACAGCTGTTGGTGGT
GATACTGCTGGTTTCGATCTTGGCAACGGCGGCCTTTACGGCCTATCGGGAGTCAGTCCGCTCGGCCAACTTGCGTGCGG
CTCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACACAAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGTCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAGGGCATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGTTGGACAGGGAGGCGGAACCGAGGGTATTGCGTTTGAACGAGTCGTTGACAGCAG
TAGTGTGCGGGAAGATGAAGAGTAAGGGAAGCTGTACGGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAG
CCTTTTATGGGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

92.073

100

0.921
  comP Neisseria meningitidis 8013

50.336

90.854

0.457
  comP Neisseria gonorrhoeae MS11

50.34

89.634

0.451