Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   CYJ98_RS07040 Genome accession   NZ_CP136962
Coordinates   1520484..1521125 (+) Length   213 a.a.
NCBI ID   WP_101755418.1    Uniprot ID   -
Organism   Neisseria perflava strain UMB0023     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1522067..1530106 1520484..1521125 flank 942


Gene organization within MGE regions


Location: 1520484..1530106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS07040 (CYJ98_007040) dsbA1 1520484..1521125 (+) 642 WP_101755418.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  CYJ98_RS07045 (CYJ98_007045) - 1521170..1521994 (+) 825 WP_101755248.1 undecaprenyl-diphosphate phosphatase -
  CYJ98_RS07050 (CYJ98_007050) comP 1522067..1522561 (-) 495 WP_167382852.1 type IV pilin protein Machinery gene
  CYJ98_RS07055 (CYJ98_007055) comE 1522744..1523031 (-) 288 WP_317869910.1 ComEA family DNA-binding protein Machinery gene
  CYJ98_RS07085 (CYJ98_007085) thrB 1529183..1530106 (+) 924 WP_101755950.1 homoserine kinase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23794.63 Da        Isoelectric Point: 9.9901

>NTDB_id=893791 CYJ98_RS07040 WP_101755418.1 1520484..1521125(+) (dsbA1) [Neisseria perflava strain UMB0023]
MKQRIKQTIAALSLSLLSLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVGKQTSFDSKKLLQAYNNPAAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGTDWKVGMKTIDELIIKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=893791 CYJ98_RS07040 WP_101755418.1 1520484..1521125(+) (dsbA1) [Neisseria perflava strain UMB0023]
ATGAAGCAGCGTATAAAACAAACCATTGCCGCACTCAGCCTGAGCCTGCTCAGTCTGAGTGCGCAGGCTGCTACCGAAGG
CGTGGACTATACTGTTCTTAGTCGTCCTATCCCGCAGCAACAAGCCGGAAAAATTGAAGTGCTTGAGTTTTTCGGCTACT
TCTGCGTTCATTGTTACCATCTCGATCCGGTTTTGTTGCAACACAGTAAAACCTTCGCTAAAGATGTTTCCTTACGGACA
GAGCACGTCGTTTGGATGCCTGAAATGTTGGGTTTGGCCAAGGTTGCCGCAGCCGTCAATCTTTCAGGTTTGAAATATCA
AGCCAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATTAACCTGGCCGATACCAATGTATTCCGATCGTGGGTGG
GTAAACAAACGAGTTTTGATAGTAAAAAACTGCTTCAAGCCTACAACAATCCTGCTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATCGTCGGTGGTAAATACAAAGTCAATTTCAACGG
TACCGACTGGAAAGTCGGTATGAAAACCATAGACGAGCTCATCATCAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

59.358

87.793

0.521
  dsbA2 Neisseria meningitidis MC58

59.563

85.915

0.512