Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AAH980_RS10465 Genome accession   NZ_CP154856
Coordinates   2226128..2226655 (-) Length   175 a.a.
NCBI ID   WP_284080622.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2221128..2231655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS10445 (AAH980_10445) - 2221317..2222192 (-) 876 WP_284080510.1 hypothetical protein -
  AAH980_RS10450 (AAH980_10450) aroB 2222208..2223290 (-) 1083 WP_004884725.1 3-dehydroquinate synthase -
  AAH980_RS10455 (AAH980_10455) aroK 2223319..2223888 (-) 570 WP_002051689.1 shikimate kinase AroK -
  AAH980_RS10460 (AAH980_10460) pilQ 2223900..2226065 (-) 2166 WP_004884727.1 type IV pilus secretin PilQ family protein Machinery gene
  AAH980_RS10465 (AAH980_10465) pilP 2226128..2226655 (-) 528 WP_284080622.1 pilus assembly protein PilP Machinery gene
  AAH980_RS10470 (AAH980_10470) pilO 2226666..2227406 (-) 741 WP_245134252.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAH980_RS10475 (AAH980_10475) pilN 2227403..2228047 (-) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  AAH980_RS10480 (AAH980_10480) comM 2228047..2229105 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19413.63 Da        Isoelectric Point: 9.4011

>NTDB_id=893623 AAH980_RS10465 WP_284080622.1 2226128..2226655(-) (pilP) [Acinetobacter nosocomialis strain Ab25]
MKIKQITLYVLACAALLGCDSRIDAVNQQMASIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLENYALEALNMKGSMRNNRGQILALIQTPDHQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=893623 AAH980_RS10465 WP_284080622.1 2226128..2226655(-) (pilP) [Acinetobacter nosocomialis strain Ab25]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCCTGTGCCGCTCTTTTGGGATGTGATTCAAGAATTGACGCAGTCAA
TCAGCAAATGGCAAGTATTCGTAATCAGCCACCGCTCCCTATTGAGCCAGCGCCGATTTTTACCCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGCCCGTTTATGCCAAGCTCACTGGCAGCTGAGCTTAAAATTATGGCCGGGAAGCGA
GTGTATCCAAATTTCTCACGTGCACCGCAACCATTAGAAAACTATGCACTTGAAGCCTTAAATATGAAAGGAAGCATGCG
TAATAATCGTGGTCAAATATTGGCTTTGATTCAGACACCGGATCATCAAATTGAACGGGTACAAGTGGGTAATTATATGG
GCATGAATCAGGGCCGTATTACTCATATTAGTCCAACCCAGATTGATCTGGTCGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAGAGACCGAGAACTTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

96.571

100

0.966
  comL/pilP Acinetobacter baylyi ADP1

70.76

97.714

0.691