Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AAH980_RS10475 Genome accession   NZ_CP154856
Coordinates   2227403..2228047 (-) Length   214 a.a.
NCBI ID   WP_006581060.1    Uniprot ID   A0AA36KAN5
Organism   Acinetobacter nosocomialis strain Ab25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2222403..2233047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS10455 (AAH980_10455) aroK 2223319..2223888 (-) 570 WP_002051689.1 shikimate kinase AroK -
  AAH980_RS10460 (AAH980_10460) pilQ 2223900..2226065 (-) 2166 WP_004884727.1 type IV pilus secretin PilQ family protein Machinery gene
  AAH980_RS10465 (AAH980_10465) pilP 2226128..2226655 (-) 528 WP_284080622.1 pilus assembly protein PilP Machinery gene
  AAH980_RS10470 (AAH980_10470) pilO 2226666..2227406 (-) 741 WP_245134252.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAH980_RS10475 (AAH980_10475) pilN 2227403..2228047 (-) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  AAH980_RS10480 (AAH980_10480) comM 2228047..2229105 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  AAH980_RS10485 (AAH980_10485) ponA 2229267..2231826 (+) 2560 Protein_2057 penicillin-binding protein PBP1a -
  AAH980_RS10490 (AAH980_10490) - 2231844..2232668 (-) 825 WP_284080512.1 putative RNA methyltransferase -
  AAH980_RS10495 (AAH980_10495) - 2232671..2233003 (-) 333 WP_002051722.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24226.61 Da        Isoelectric Point: 6.0119

>NTDB_id=893625 AAH980_RS10475 WP_006581060.1 2227403..2228047(-) (pilN) [Acinetobacter nosocomialis strain Ab25]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=893625 AAH980_RS10475 WP_006581060.1 2227403..2228047(-) (pilN) [Acinetobacter nosocomialis strain Ab25]
ATGGCAACAATTAACTTACTACCTTGGCGTGAAGAGCTAAGGGAACAACGAAAAAAACAATTTATAACTCTATGCTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACCAAATTCAGTCGAGTGGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACGGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGATAAGCCAGCCGTAGCAAAAGACACGGGGGCAGCCA
AATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KAN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.121

100

0.911
  comN/pilN Acinetobacter baylyi ADP1

72.5

93.458

0.678