Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P4826_RS13565 Genome accession   NZ_CP136921
Coordinates   2820257..2820811 (+) Length   184 a.a.
NCBI ID   WP_317700912.1    Uniprot ID   -
Organism   Diaphorobacter limosus strain Y-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2815257..2825811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4826_RS13540 (P4826_13540) selA 2815614..2817083 (+) 1470 WP_317700908.1 L-seryl-tRNA(Sec) selenium transferase -
  P4826_RS13545 (P4826_13545) selB 2817095..2819002 (+) 1908 WP_317700909.1 selenocysteine-specific translation elongation factor -
  P4826_RS13555 (P4826_13555) - 2819221..2819613 (-) 393 WP_317700910.1 DsrE family protein -
  P4826_RS13560 (P4826_13560) - 2819610..2820068 (-) 459 WP_317700911.1 glycine cleavage system protein H -
  P4826_RS13565 (P4826_13565) ssb 2820257..2820811 (+) 555 WP_317700912.1 single-stranded DNA-binding protein Machinery gene
  P4826_RS13570 (P4826_13570) mnmA 2820936..2822048 (-) 1113 WP_317700913.1 tRNA 2-thiouridine(34) synthase MnmA -
  P4826_RS13575 (P4826_13575) - 2822115..2823086 (+) 972 WP_317700914.1 LysR family transcriptional regulator -
  P4826_RS13580 (P4826_13580) tcuA 2823223..2824689 (+) 1467 WP_317700915.1 FAD-dependent tricarballylate dehydrogenase TcuA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19655.68 Da        Isoelectric Point: 5.9554

>NTDB_id=893440 P4826_RS13565 WP_317700912.1 2820257..2820811(+) (ssb) [Diaphorobacter limosus strain Y-1]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRQGMGGGQGGGAGGYDDGGYGDAGGGYEAPRRAAPPQQRPAAAPAARPAP
APAPVAQAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=893440 P4826_RS13565 WP_317700912.1 2820257..2820811(+) (ssb) [Diaphorobacter limosus strain Y-1]
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTGGGGCGCGACCCCGAGATGCGCACCTTCCCCAGCGGCGACCA
GGTCGCCAACGTGCGCATCGCCACCACCGATCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTCGGCCAGTACCTGAGGAAGGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAAATCCGCGCCGACACCATGCAAAT
GCTGGGTAGCCGCCAAGGCATGGGCGGCGGCCAGGGCGGCGGCGCCGGTGGCTATGACGACGGTGGCTACGGCGACGCCG
GCGGCGGCTACGAGGCCCCGCGCCGCGCCGCGCCCCCGCAGCAACGCCCCGCGGCTGCCCCCGCAGCCCGCCCGGCCCCG
GCGCCCGCCCCCGTGGCCCAGGCCCCGCGCGCGGCCTCGGGCTTTGACGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.332

100

0.549
  ssb Vibrio cholerae strain A1552

49.479

100

0.516
  ssb Neisseria gonorrhoeae MS11

44.503

100

0.462
  ssb Neisseria meningitidis MC58

43.716

99.457

0.435