Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R2R35_RS04260 Genome accession   NZ_CP136910
Coordinates   1013329..1015137 (-) Length   602 a.a.
NCBI ID   WP_317733253.1    Uniprot ID   -
Organism   Anaerocolumna sp. AGMB13020     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1008329..1020137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2R35_RS04235 (R2R35_04235) ribE 1008585..1009232 (+) 648 WP_334309125.1 riboflavin synthase -
  R2R35_RS04240 (R2R35_04240) - 1009290..1010504 (+) 1215 WP_317733249.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R2R35_RS04245 (R2R35_04245) ribE 1010595..1011062 (+) 468 WP_317733250.1 6,7-dimethyl-8-ribityllumazine synthase -
  R2R35_RS04250 (R2R35_04250) - 1011195..1011470 (+) 276 WP_331670285.1 DUF2089 family protein -
  R2R35_RS04255 (R2R35_04255) - 1011777..1012736 (-) 960 WP_317733252.1 acetylxylan esterase -
  R2R35_RS04260 (R2R35_04260) rcrQ 1013329..1015137 (-) 1809 WP_317733253.1 ABC transporter ATP-binding protein Regulator
  R2R35_RS04265 (R2R35_04265) rcrP 1015130..1016890 (-) 1761 WP_317733254.1 ABC transporter ATP-binding protein Regulator
  R2R35_RS04270 (R2R35_04270) - 1016911..1019712 (-) 2802 WP_317733255.1 ABC transporter ATP-binding protein/permease -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 65848.52 Da        Isoelectric Point: 6.2566

>NTDB_id=893399 R2R35_RS04260 WP_317733253.1 1013329..1015137(-) (rcrQ) [Anaerocolumna sp. AGMB13020]
MSKGSDFRNPPGGGIAIVGEKHEFSAAWGKLINYCKPYFPAIILALACAVGGTVFTLTGPDMLSEMTDAITQGIMGSIDM
KLVGNIALWLAAFYGASVVLSYLQGFVMATVTQKVSKTMRADISVKINKLPLKYFDKTSYGDILSRVTNDVDTIGQTLNQ
SIGNLVSAITLLAGSVIMMLVTNWIMALVAIGSSLLGFVIMILIISRSQKYFTEQQELLGAINGHVEEVYAGHNVVKVYN
AEEELSGEFTQINKKLFSSNWKSQFMSGLMMPLMSFIGNIGYVAVCVAGAALAMKGSITFGVIVAFMVYVRLFTQPLSQI
AQAATSLQSTGAASYRVFEFLGEAELEDESGKHTIMKTAKGDIEFKNVKFGYSENKIIIKDFSAKVKAGQKIAIVGPTGA
GKTTMVNLLMRFYELNSGEIRIDNIPLRTLTRENVHQLFCMVLQDTWLFEGTIRENIVYNKIGVSEEEIVAACKAAGVHH
FIKTLPEGYNTILNEEASLSAGQKQLITIARAMIENAPMLILDEATSSVDTRTEVLIQEAMDKLMEGRTSIVIAHRLSTI
KNADLILVMKDGDIIESGNHEQLLRKKGFYAELYNSQFDEAS

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=893399 R2R35_RS04260 WP_317733253.1 1013329..1015137(-) (rcrQ) [Anaerocolumna sp. AGMB13020]
ATGAGTAAAGGATCAGACTTTCGTAATCCGCCGGGAGGCGGAATCGCCATAGTAGGTGAAAAACATGAATTCTCAGCTGC
CTGGGGTAAACTGATAAACTATTGTAAGCCTTATTTCCCTGCAATAATCCTTGCACTGGCCTGCGCGGTGGGCGGAACGG
TTTTTACCCTGACAGGTCCGGATATGCTAAGTGAAATGACTGATGCTATCACACAGGGAATAATGGGAAGCATTGATATG
AAGCTGGTTGGTAACATTGCTTTATGGCTGGCAGCTTTTTATGGTGCCAGCGTGGTACTTTCCTATTTACAGGGATTTGT
AATGGCAACTGTTACACAGAAAGTATCCAAAACCATGCGTGCGGATATTTCAGTTAAGATAAATAAGCTGCCACTTAAAT
ATTTTGATAAGACCAGCTATGGTGATATCCTCTCACGTGTTACCAATGATGTGGATACCATTGGACAGACCCTAAATCAA
AGCATCGGAAATCTTGTATCTGCAATAACGCTGCTTGCAGGTTCTGTTATAATGATGTTAGTTACCAACTGGATTATGGC
ATTGGTTGCAATCGGCTCCTCCTTGCTTGGATTTGTAATTATGATACTCATTATTTCACGTTCGCAAAAGTATTTTACCG
AGCAGCAGGAACTTTTAGGTGCCATTAACGGTCATGTGGAAGAGGTTTATGCCGGACATAATGTAGTTAAGGTCTATAAT
GCGGAGGAAGAATTAAGCGGTGAATTTACACAGATCAATAAGAAACTGTTTTCAAGCAACTGGAAGTCACAGTTTATGTC
AGGGCTCATGATGCCCCTTATGAGCTTTATTGGAAATATAGGTTATGTGGCAGTCTGTGTTGCAGGAGCAGCCCTTGCTA
TGAAAGGCTCTATAACCTTTGGTGTTATTGTTGCTTTTATGGTTTATGTCCGTCTCTTTACACAACCTCTTAGCCAGATT
GCTCAGGCAGCCACAAGCTTACAGTCTACCGGAGCTGCAAGTTATCGCGTATTTGAGTTCTTAGGTGAAGCAGAATTAGA
AGATGAAAGCGGTAAACATACAATTATGAAAACGGCAAAAGGAGATATTGAATTTAAGAATGTTAAGTTTGGATATTCTG
AGAATAAAATAATCATAAAGGATTTTTCCGCAAAGGTAAAAGCCGGGCAAAAGATTGCAATCGTAGGACCCACCGGTGCA
GGAAAGACTACCATGGTAAATCTTTTAATGAGATTTTATGAACTTAACAGCGGTGAAATACGAATAGATAATATACCTTT
AAGAACCCTGACAAGAGAGAATGTTCATCAATTATTCTGTATGGTATTACAGGATACCTGGCTCTTTGAAGGTACAATTC
GTGAAAATATCGTTTATAATAAAATCGGGGTATCGGAGGAGGAAATAGTGGCAGCCTGCAAAGCAGCAGGGGTACATCAT
TTTATCAAAACACTGCCTGAAGGATATAACACGATTCTAAATGAGGAAGCCAGCCTTTCAGCAGGGCAGAAGCAGCTGAT
TACCATAGCAAGAGCCATGATCGAAAATGCACCTATGCTGATTCTTGATGAAGCTACGAGTTCCGTTGACACACGTACGG
AAGTCCTGATACAGGAAGCTATGGATAAGCTGATGGAGGGAAGAACCTCAATTGTTATTGCTCATAGGTTGTCTACCATT
AAAAATGCAGACCTGATACTGGTTATGAAGGACGGAGATATTATTGAAAGCGGAAATCATGAACAGCTATTAAGGAAAAA
AGGCTTCTATGCAGAACTTTACAACAGCCAGTTTGATGAGGCTTCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(42-317)

ABC transporter (ABC_tran)

(380-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.73

94.186

0.553