Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R1T29_RS15805 Genome accession   NZ_CP136903
Coordinates   3402266..3403378 (-) Length   370 a.a.
NCBI ID   WP_203505192.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain X1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3397266..3408378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS15775 (R1T29_15775) hemF 3397727..3398644 (-) 918 WP_203505196.1 oxygen-dependent coproporphyrinogen oxidase -
  R1T29_RS15780 (R1T29_15780) - 3398692..3399249 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  R1T29_RS15785 (R1T29_15785) purE 3399449..3399934 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  R1T29_RS15790 (R1T29_15790) - 3399939..3401066 (+) 1128 WP_203505194.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  R1T29_RS15795 (R1T29_15795) - 3401136..3401705 (-) 570 WP_063517813.1 type I DNA topoisomerase -
  R1T29_RS15800 (R1T29_15800) - 3401784..3402263 (-) 480 WP_005461440.1 DUF494 family protein -
  R1T29_RS15805 (R1T29_15805) dprA 3402266..3403378 (-) 1113 WP_203505192.1 DNA-processing protein DprA Machinery gene
  R1T29_RS15810 (R1T29_15810) - 3403362..3404456 (-) 1095 WP_005497418.1 LysM peptidoglycan-binding domain-containing protein -
  R1T29_RS15815 (R1T29_15815) def 3404595..3405113 (+) 519 WP_005461416.1 peptide deformylase -
  R1T29_RS15820 (R1T29_15820) fmt 3405147..3406094 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  R1T29_RS15825 (R1T29_15825) rsmB 3406175..3407458 (+) 1284 WP_140385261.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39999.70 Da        Isoelectric Point: 6.4133

>NTDB_id=893311 R1T29_RS15805 WP_203505192.1 3402266..3403378(-) (dprA) [Vibrio parahaemolyticus strain X1]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINFSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATATNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGVLQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=893311 R1T29_RS15805 WP_203505192.1 3402266..3403378(-) (dprA) [Vibrio parahaemolyticus strain X1]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTTCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTGCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGTGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.054

100

0.841
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Haemophilus influenzae Rd KW20

46.588

91.081

0.424
  dprA Legionella pneumophila strain ERS1305867

46.97

89.189

0.419
  dprA Neisseria meningitidis strain C311

38.046

100

0.4
  dprA Neisseria meningitidis MC58

38.046

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.176

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.917

100

0.376