Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R1Y14_RS01835 Genome accession   NZ_CP136899
Coordinates   335620..336378 (+) Length   252 a.a.
NCBI ID   WP_000410378.1    Uniprot ID   A0A064C0A8
Organism   Streptococcus pneumoniae strain ST62     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 330620..341378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS01805 (R1Y14_01805) comE 331216..331968 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  R1Y14_RS01810 (R1Y14_01810) comD/comD1 331965..333290 (-) 1326 WP_001860404.1 competence system sensor histidine kinase ComD Regulator
  R1Y14_RS01815 (R1Y14_01815) comC/comC1 333311..333436 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R1Y14_RS01825 (R1Y14_01825) rlmH 333719..334198 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R1Y14_RS01830 (R1Y14_01830) htrA 334381..335562 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  R1Y14_RS01835 (R1Y14_01835) spo0J 335620..336378 (+) 759 WP_000410378.1 ParB/RepB/Spo0J family partition protein Regulator
  R1Y14_RS01840 (R1Y14_01840) dnaA 336591..337952 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R1Y14_RS01845 (R1Y14_01845) dnaN 338120..339256 (+) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  R1Y14_RS01850 (R1Y14_01850) - 339321..339515 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  R1Y14_RS01855 (R1Y14_01855) ychF 339599..340714 (+) 1116 WP_001218710.1 redox-regulated ATPase YchF -
  R1Y14_RS01860 (R1Y14_01860) pth 340785..341354 (+) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29153.50 Da        Isoelectric Point: 9.0667

>NTDB_id=893228 R1Y14_RS01835 WP_000410378.1 335620..336378(+) (spo0J) [Streptococcus pneumoniae strain ST62]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=893228 R1Y14_RS01835 WP_000410378.1 335620..336378(+) (spo0J) [Streptococcus pneumoniae strain ST62]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C0A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508