Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R0137_RS15865 Genome accession   NZ_CP136865
Coordinates   3573087..3573587 (-) Length   166 a.a.
NCBI ID   WP_407327373.1    Uniprot ID   -
Organism   Congregibacter brevis strain IMCC45268     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3568087..3578587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0137_RS15840 (R0137_15800) fabA 3568547..3569062 (+) 516 WP_407327367.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  R0137_RS15845 (R0137_15805) fabB 3569066..3570292 (+) 1227 WP_407327368.1 beta-ketoacyl-ACP synthase I -
  R0137_RS15850 (R0137_15810) glp 3570406..3571611 (-) 1206 WP_407327369.1 gephyrin-like molybdotransferase Glp -
  R0137_RS15855 (R0137_15815) moaB 3571621..3572133 (-) 513 WP_407327370.1 molybdenum cofactor biosynthesis protein B -
  R0137_RS15860 (R0137_15820) - 3572136..3573017 (-) 882 WP_407327372.1 sugar nucleotide-binding protein -
  R0137_RS15865 (R0137_15825) ssb 3573087..3573587 (-) 501 WP_407327373.1 single-stranded DNA-binding protein Machinery gene
  R0137_RS15870 (R0137_15830) - 3573664..3574869 (-) 1206 WP_407327375.1 MFS transporter -
  R0137_RS15875 (R0137_15835) uvrA 3575041..3577890 (+) 2850 WP_407327377.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17883.56 Da        Isoelectric Point: 4.7884

>NTDB_id=893193 R0137_RS15865 WP_407327373.1 3573087..3573587(-) (ssb) [Congregibacter brevis strain IMCC45268]
MASRGVNKVILVGNLGADPETRFMPSGGSVTNVRLATSETWKDKQTGQQQERTEWHRVVFFNRLAEVAAEYLRKGSKLYV
EGAIRTRKWQDQSGQDRYTTEIVGSEMQMLDSRGGSGGSNDGGYDQSYPEAGGSSGGSNFSAPSQNSPAAAPQPAAMGDI
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=893193 R0137_RS15865 WP_407327373.1 3573087..3573587(-) (ssb) [Congregibacter brevis strain IMCC45268]
ATGGCATCGCGCGGCGTCAACAAAGTGATTCTTGTAGGAAACTTAGGCGCTGATCCAGAAACGCGCTTTATGCCCTCCGG
TGGTTCAGTAACCAACGTTCGTCTGGCGACCTCCGAAACCTGGAAAGACAAGCAAACAGGACAGCAGCAGGAGCGTACTG
AGTGGCACCGCGTAGTGTTCTTTAACCGCCTAGCCGAAGTGGCTGCTGAGTATCTGCGCAAGGGTTCAAAACTGTATGTG
GAAGGCGCTATCCGCACTCGTAAGTGGCAAGACCAGTCTGGTCAGGACCGCTATACCACAGAGATAGTCGGCAGTGAGAT
GCAGATGCTCGACAGTCGCGGAGGAAGTGGCGGCAGCAATGACGGAGGCTATGACCAGAGTTACCCTGAAGCGGGTGGTT
CGAGTGGCGGCTCCAACTTTAGCGCGCCGTCTCAAAATAGCCCTGCAGCGGCGCCCCAACCGGCGGCGATGGGCGATATC
GACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.556

100

0.602
  ssb Glaesserella parasuis strain SC1401

54.19

100

0.584
  ssb Neisseria gonorrhoeae MS11

49.133

100

0.512
  ssb Neisseria meningitidis MC58

48.555

100

0.506