Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABDT89_RS20865 Genome accession   NZ_CP152469
Coordinates   4275686..4276222 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Sel(aux)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4270686..4281222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDT89_RS20850 aac(3)-IVa 4271261..4272037 (+) 777 WP_001199192.1 aminoglycoside N-acetyltransferase AAC(3)-IVa -
  ABDT89_RS20855 yjbR 4272219..4272575 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABDT89_RS20860 uvrA 4272610..4275432 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABDT89_RS20865 ssb 4275686..4276222 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABDT89_RS20870 yjcB 4276321..4276602 (-) 282 WP_001295689.1 YjcB family protein -
  ABDT89_RS20875 pdeC 4277032..4278618 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  ABDT89_RS20880 soxS 4278621..4278944 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABDT89_RS20885 soxR 4279030..4279494 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=893054 ABDT89_RS20865 WP_000168305.1 4275686..4276222(+) (ssb) [Escherichia coli strain Sel(aux)]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=893054 ABDT89_RS20865 WP_000168305.1 4275686..4276222(+) (ssb) [Escherichia coli strain Sel(aux)]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489