Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABDU02_RS20860 Genome accession   NZ_CP152466
Coordinates   4274266..4274802 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Sel(eng_pnp-mut)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4269266..4279802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDU02_RS20845 aphA 4269740..4270453 (+) 714 WP_001226928.1 acid phosphatase AphA -
  ABDU02_RS20850 yjbR 4270799..4271155 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABDU02_RS20855 uvrA 4271190..4274012 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABDU02_RS20860 ssb 4274266..4274802 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABDU02_RS20865 yjcB 4274901..4275182 (-) 282 WP_001295689.1 YjcB family protein -
  ABDU02_RS20870 pdeC 4275612..4277198 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  ABDU02_RS20875 soxS 4277201..4277524 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABDU02_RS20880 soxR 4277610..4278074 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=892808 ABDU02_RS20860 WP_000168305.1 4274266..4274802(+) (ssb) [Escherichia coli strain Sel(eng_pnp-mut)]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=892808 ABDU02_RS20860 WP_000168305.1 4274266..4274802(+) (ssb) [Escherichia coli strain Sel(eng_pnp-mut)]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489