Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   RYQ61_RS07885 Genome accession   NZ_CP136799
Coordinates   1557507..1558859 (+) Length   450 a.a.
NCBI ID   WP_003072979.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552507..1563859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS07860 (RYQ61_07860) ccpA 1552736..1553740 (+) 1005 WP_020998737.1 catabolite control protein A Regulator
  RYQ61_RS07865 (RYQ61_07865) - 1553833..1554831 (+) 999 WP_003072984.1 glycosyltransferase family 4 protein -
  RYQ61_RS07870 (RYQ61_07870) - 1554833..1556146 (+) 1314 WP_102568207.1 glycosyltransferase family 4 protein -
  RYQ61_RS07875 (RYQ61_07875) - 1556173..1556514 (+) 342 WP_048786749.1 hypothetical protein -
  RYQ61_RS07880 (RYQ61_07880) micA 1556813..1557514 (+) 702 WP_003072980.1 response regulator YycF Regulator
  RYQ61_RS07885 (RYQ61_07885) micB 1557507..1558859 (+) 1353 WP_003072979.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RYQ61_RS07890 (RYQ61_07890) vicX 1558861..1559664 (+) 804 WP_102568206.1 MBL fold metallo-hydrolase Regulator
  RYQ61_RS07895 (RYQ61_07895) - 1559673..1560032 (+) 360 WP_003072977.1 YbaN family protein -
  RYQ61_RS07900 (RYQ61_07900) rnc 1560421..1561119 (+) 699 WP_021002810.1 ribonuclease III -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 51225.43 Da        Isoelectric Point: 4.7207

>NTDB_id=892742 RYQ61_RS07885 WP_003072979.1 1557507..1558859(+) (micB) [Streptococcus intermedius strain XH2169]
MIDNIRQFVVSKDFVFVLLILGFILVITLLSLENRRDNVRIRQLNQKVKDLIAGDYSEVLDMQGGPEITDITNSINDLSE
VIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIIMINDMATKQLGVKESDARKMNILKLLGIEDEYDLRDLITKVPE
LTIDSQDENGEFLSLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALS
EPVAPDFIKVSLDETNRMMRMVSDLLSLSRIDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSTW
VEIDTDKMTQVIDNIINNAIKYSPDGGKITVSMKTTETQMILSISDEGLGIPKKDLPKIFDRFYRVDKARSRAQGGSGLG
LAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLPYDKEAVKDDDWEEDGLEG

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=892742 RYQ61_RS07885 WP_003072979.1 1557507..1558859(+) (micB) [Streptococcus intermedius strain XH2169]
ATGATTGATAATATAAGACAATTTGTTGTATCAAAAGATTTTGTATTTGTCCTACTCATTTTAGGATTTATTTTGGTCAT
TACGTTGCTGTCCTTGGAAAATCGACGTGATAATGTTCGTATTCGCCAATTGAATCAAAAAGTGAAAGACTTAATTGCGG
GAGATTATTCAGAAGTTTTAGATATGCAAGGTGGTCCAGAAATCACTGACATTACCAATAGTATCAATGATTTATCTGAA
GTGATTCGCTTAACGCATGAAAATTTAGAACAAGAAACTAAGAGGTTATCAAGTATCTTGTCCTACATGACGGACGGTGT
CCTTGCGACCAATCGTCGTGGGCAAATTATCATGATCAATGATATGGCGACCAAGCAGTTGGGAGTCAAGGAATCTGATG
CACGAAAGATGAATATCTTAAAACTGTTGGGGATTGAAGATGAATATGATTTACGGGACTTGATTACGAAAGTTCCAGAG
CTGACCATTGATTCACAGGATGAAAATGGAGAATTTTTAAGCCTGCGTGTTCGCTTTGCCTTGATTCGTCGAGAGTCAGG
CTTTATTTCTGGGTTGGTTGCGGTGCTGCATGATACAACGGAGCAGGAAAAAGAGGAACGTGAGCGGAGACTATTTGTTT
CTAATGTCAGTCATGAATTGCGTACTCCCTTGACCAGTGTCAAGTCTTATCTGGAAGCATTAGATGAAGGCGCTTTGTCT
GAGCCTGTTGCGCCAGATTTCATCAAGGTTTCGTTAGATGAAACCAATCGGATGATGCGAATGGTTTCGGACTTACTGAG
TTTGTCGCGGATTGATAATGCGACTAGCCATTTGGATATTGAACTGACAAATTTTACAGCTTTCATCACATTTATTTTGA
ATCGTTTTGACAAGATTAGAAGTCAGAACGATGATAAAAAGTACGAAATTATCCGAGATTATCCAATTAATTCTACTTGG
GTCGAAATTGATACAGATAAAATGACACAAGTTATTGATAATATTATCAATAATGCCATTAAATATTCTCCTGATGGTGG
TAAGATTACGGTGAGTATGAAAACAACTGAGACCCAAATGATTTTATCTATATCAGATGAAGGTTTAGGAATTCCCAAAA
AAGATTTACCAAAAATTTTTGATCGATTTTATCGTGTAGACAAAGCGAGAAGTCGTGCACAAGGTGGATCGGGACTGGGC
TTGGCCATTGCTAAAGAAATTATCAAGCAGCATAACGGTTTTATCTGGGCGAAGAGTGAATATGGTAAAGGATCGACATT
TACAATCGTTCTGCCTTATGACAAAGAAGCTGTCAAAGATGATGATTGGGAAGAAGATGGATTAGAAGGATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(95-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

81.549

97.556

0.796
  vicK Streptococcus mutans UA159

71.149

90.889

0.647