Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RYQ61_RS07890 Genome accession   NZ_CP136799
Coordinates   1558861..1559664 (+) Length   267 a.a.
NCBI ID   WP_102568206.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553861..1564664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS07870 (RYQ61_07870) - 1554833..1556146 (+) 1314 WP_102568207.1 glycosyltransferase family 4 protein -
  RYQ61_RS07875 (RYQ61_07875) - 1556173..1556514 (+) 342 WP_048786749.1 hypothetical protein -
  RYQ61_RS07880 (RYQ61_07880) micA 1556813..1557514 (+) 702 WP_003072980.1 response regulator YycF Regulator
  RYQ61_RS07885 (RYQ61_07885) micB 1557507..1558859 (+) 1353 WP_003072979.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RYQ61_RS07890 (RYQ61_07890) vicX 1558861..1559664 (+) 804 WP_102568206.1 MBL fold metallo-hydrolase Regulator
  RYQ61_RS07895 (RYQ61_07895) - 1559673..1560032 (+) 360 WP_003072977.1 YbaN family protein -
  RYQ61_RS07900 (RYQ61_07900) rnc 1560421..1561119 (+) 699 WP_021002810.1 ribonuclease III -
  RYQ61_RS07905 (RYQ61_07905) smc 1561110..1564643 (+) 3534 WP_102568205.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29879.77 Da        Isoelectric Point: 6.0341

>NTDB_id=892743 RYQ61_RS07890 WP_102568206.1 1558861..1559664(+) (vicX) [Streptococcus intermedius strain XH2169]
MNEKGFKYSILASGSTGNCFYLETPKRKLLIDAGLSGKKITSLLSEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYHLD
IYANQDTWNAMESALGKIDVSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRLMKDDKSFVLLTDTGYVSDRMAGII
ENADGYLIESNHDIEILRSGAYPWSLKQRILSDQGHLSNDDGAETMIRTLGIRTKKIYLGHLSKENNTKELAHITMVNQL
AQADLAVEHDFHVYDTSPDTATPLTNI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=892743 RYQ61_RS07890 WP_102568206.1 1558861..1559664(+) (vicX) [Streptococcus intermedius strain XH2169]
ATGAACGAGAAAGGATTTAAGTACAGTATTTTAGCGTCGGGTTCTACTGGTAATTGTTTCTATTTAGAAACCCCGAAGAG
AAAGTTGTTGATTGATGCAGGTTTATCCGGAAAGAAAATTACTAGTTTGTTGAGCGAAATTGATCGTAAGCCAGAGGATT
TGGATGCTATTTTGGTGACGCATGAACATAAAGACCATATTCATGGTGTGGGTGTTTTAGCACGGAAATATCATTTAGAT
ATTTATGCTAATCAAGATACTTGGAATGCCATGGAATCAGCACTTGGAAAGATTGATGTCAGTCAGAAGCATATTTTTGA
AATGGGAAAAACGAAAACATTTGGTGATATTGATATTGAAAGTTTTGGGGTCAGTCATGATGCGGTTGCACCACAATTCT
ATCGATTGATGAAAGATGACAAAAGTTTTGTTTTGCTGACGGACACTGGTTATGTCAGCGATCGGATGGCAGGAATCATT
GAAAATGCAGATGGCTATTTGATTGAATCAAATCATGATATTGAAATCCTGCGCAGTGGTGCTTATCCTTGGAGTTTAAA
GCAGCGAATTTTGTCTGATCAAGGGCATTTGTCGAATGATGATGGTGCTGAAACTATGATTCGCACTCTTGGGATTCGGA
CAAAGAAAATCTATCTAGGACATCTCAGCAAGGAAAATAATACTAAAGAATTGGCTCATATTACAATGGTCAATCAATTG
GCACAAGCTGACTTGGCAGTGGAGCATGATTTTCATGTGTATGATACCTCACCAGATACGGCGACACCTTTAACTAATAT
TTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

81.273

100

0.813