Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1Z03_RS03215 Genome accession   NZ_CP136797
Coordinates   675283..675852 (-) Length   189 a.a.
NCBI ID   WP_272566325.1    Uniprot ID   -
Organism   Acidovorax sp. BLS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 670283..680852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Z03_RS03180 (R1Z03_03180) - 671560..671898 (-) 339 WP_284397368.1 serine/threonine protein kinase -
  R1Z03_RS03185 (R1Z03_03185) - 672049..672930 (-) 882 WP_317356823.1 MBL fold metallo-hydrolase -
  R1Z03_RS03190 (R1Z03_03190) - 673055..673369 (+) 315 WP_284397363.1 helix-turn-helix transcriptional regulator -
  R1Z03_RS03195 (R1Z03_03195) - 673375..673803 (+) 429 WP_317356825.1 YeeE/YedE family protein -
  R1Z03_RS03200 (R1Z03_03200) - 673820..674242 (+) 423 WP_284430508.1 DUF6691 family protein -
  R1Z03_RS03205 (R1Z03_03205) - 674345..674893 (+) 549 WP_284427864.1 type 1 glutamine amidotransferase domain-containing protein -
  R1Z03_RS03210 (R1Z03_03210) - 674899..675171 (+) 273 WP_317356828.1 hypothetical protein -
  R1Z03_RS03215 (R1Z03_03215) ssb 675283..675852 (-) 570 WP_272566325.1 single-stranded DNA-binding protein Machinery gene
  R1Z03_RS03220 (R1Z03_03220) - 676028..677374 (+) 1347 WP_284430506.1 chloride channel protein -
  R1Z03_RS03225 (R1Z03_03225) - 677425..677907 (+) 483 WP_284397350.1 C40 family peptidase -
  R1Z03_RS03230 (R1Z03_03230) - 677953..679068 (+) 1116 WP_317356836.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20090.17 Da        Isoelectric Point: 5.9555

>NTDB_id=892661 R1Z03_RS03215 WP_272566325.1 675283..675852(-) (ssb) [Acidovorax sp. BLS4]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQAGQEKFTTEIRADTMQMLGSRQGMGGGQGGGGGYEDSGYGGGGNDGGYDNSAPPAPARRPAPAPVQRPAA
PAPRPAPAPAAQAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=892661 R1Z03_RS03215 WP_272566325.1 675283..675852(-) (ssb) [Acidovorax sp. BLS4]
ATGGCATCCGTCAACAAAGTCATCATCGTGGGCAATCTCGGGCGCGATCCCGAAATGCGCACCTTCCCCAGCGGCGACCA
GGTCGCCAACGTCACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTGTTCAACGGCCGCCTGGCCGAAATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCGGCCAGGAAAAATTCACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCCAGGGCGGCGGTGGCGGCTACGAAGACAGCGGCTATGGCGGCGGTGGCA
ACGACGGCGGCTACGACAACAGCGCCCCGCCCGCTCCGGCACGCCGCCCGGCACCGGCACCAGTCCAGCGCCCTGCCGCG
CCCGCACCCCGCCCGGCACCGGCGCCCGCCGCCCAGGCCCCGCGCGCGGCCTCGGGCTTCGACGACATGGACGACGACAT
TCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.041

100

0.54
  ssb Vibrio cholerae strain A1552

48.718

100

0.503
  ssb Neisseria gonorrhoeae MS11

42.408

100

0.429
  ssb Neisseria meningitidis MC58

41.885

100

0.423