Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RUI03_RS07185 Genome accession   NZ_CP136758
Coordinates   1520478..1520954 (+) Length   158 a.a.
NCBI ID   WP_317289608.1    Uniprot ID   A0AAU0HH24
Organism   Parvularcula sp. LCG005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1515478..1525954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUI03_RS07170 (RUI03_07170) - 1517615..1517914 (+) 300 WP_317289605.1 putative quinol monooxygenase -
  RUI03_RS07175 (RUI03_07175) - 1517902..1519941 (-) 2040 WP_317289606.1 TonB-dependent receptor -
  RUI03_RS07180 (RUI03_07180) - 1520014..1520295 (-) 282 WP_317289607.1 hypothetical protein -
  RUI03_RS07185 (RUI03_07185) ssb 1520478..1520954 (+) 477 WP_317289608.1 single-stranded DNA-binding protein Machinery gene
  RUI03_RS07190 (RUI03_07190) - 1520967..1521734 (+) 768 WP_317289609.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RUI03_RS07195 (RUI03_07195) - 1521849..1523222 (+) 1374 WP_317289610.1 glutamate--cysteine ligase -
  RUI03_RS07200 (RUI03_07200) - 1523182..1523838 (+) 657 WP_317289611.1 hypothetical protein -
  RUI03_RS07205 (RUI03_07205) - 1524185..1524751 (+) 567 WP_317289612.1 HNH endonuclease -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17408.22 Da        Isoelectric Point: 5.3412

>NTDB_id=892644 RUI03_RS07185 WP_317289608.1 1520478..1520954(+) (ssb) [Parvularcula sp. LCG005]
MAGSVNKVILIGNLGQDPEVRAFSNGGQVCNLSIATSESWKDKSTGERRERTEWHRVSIMSEPLVRVAQNYLKKGSKVYI
EGQLETRKWQDKDGQDRYTTEVVLRPYRSELTMLDGRGDNAGGGYGQQISGGASSGGGSNPGYEDRGSKFELDDEIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=892644 RUI03_RS07185 WP_317289608.1 1520478..1520954(+) (ssb) [Parvularcula sp. LCG005]
ATGGCAGGTAGTGTGAACAAGGTCATTCTGATTGGCAATCTGGGCCAGGATCCTGAAGTGCGTGCATTCAGCAATGGCGG
CCAAGTCTGCAACCTGTCCATCGCCACATCCGAAAGCTGGAAGGACAAGAGCACCGGTGAGCGCCGCGAGCGCACCGAGT
GGCACCGTGTCTCGATCATGTCCGAACCGCTCGTCCGCGTGGCGCAGAACTATCTGAAAAAAGGCTCGAAAGTCTATATC
GAGGGCCAGCTTGAGACTCGCAAATGGCAGGATAAGGATGGTCAGGACCGGTACACGACTGAGGTTGTGCTGCGCCCTTA
TCGCTCTGAGCTGACCATGCTCGACGGCCGCGGCGACAATGCCGGCGGCGGCTATGGCCAACAGATTTCGGGCGGCGCGT
CATCCGGTGGCGGCAGTAATCCGGGTTATGAAGATCGCGGCTCGAAGTTCGAGCTGGATGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.714

100

0.551
  ssb Glaesserella parasuis strain SC1401

53.02

94.304

0.5
  ssb Neisseria meningitidis MC58

43.017

100

0.487
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.487