Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1T43_RS19505 Genome accession   NZ_CP136708
Coordinates   4528274..4528861 (-) Length   195 a.a.
NCBI ID   WP_159528021.1    Uniprot ID   -
Organism   Alteromonas sp. CI.11.F.A3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4523274..4533861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T43_RS19495 (R1T43_19495) - 4524249..4526930 (+) 2682 WP_317351216.1 ATP-binding protein -
  R1T43_RS19500 (R1T43_19500) - 4526914..4528161 (+) 1248 WP_317351217.1 response regulator -
  R1T43_RS19505 (R1T43_19505) ssb 4528274..4528861 (-) 588 WP_159528021.1 single-stranded DNA-binding protein Machinery gene
  R1T43_RS19510 (R1T43_19510) - 4529177..4530739 (-) 1563 WP_126872640.1 sodium/sugar symporter -
  R1T43_RS19515 (R1T43_19515) galK 4531012..4532151 (-) 1140 WP_317351221.1 galactokinase -
  R1T43_RS19520 (R1T43_19520) - 4532144..4533199 (-) 1056 WP_317351222.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21329.23 Da        Isoelectric Point: 4.9658

>NTDB_id=892561 R1T43_RS19505 WP_159528021.1 4528274..4528861(-) (ssb) [Alteromonas sp. CI.11.F.A3]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDPQGQMQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQSGQDRYTTEIIVDQMQMLGGRGGEGGGGNAGGGYQRPQNNQQGGYQQQGGQSQGGYQQQGGQNQGGQNQ
GGYQQQAPNQGGGQSQPKQPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=892561 R1T43_RS19505 WP_159528021.1 4528274..4528861(-) (ssb) [Alteromonas sp. CI.11.F.A3]
ATGGCAACGAAAGGCGTTAACAAGGTCATACTTGTGGGAAATCTAGGTAATGATCCTGAAGTACGATACATGCCTAACGG
TAACGCCGTTGCGAACCTAAGCTTGGCTACCAGCGAAAGCTGGAAAGATCCGCAAGGCCAAATGCAGGAACGCACTGAGT
GGCACCGCCTTACTATGTACCGTCGCTTAGCAGAAATTGCCGGAGAATACCTGAAAAAGGGTTCTCAAATTTACGTTGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGTCTGGCCAAGACCGTTACACTACAGAAATTATTGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGTGGTAATGCGGGTGGCGGTTATCAACGCCCTCAGAATAACCAGCAAG
GTGGATACCAGCAACAAGGTGGCCAAAGCCAAGGTGGTTATCAGCAGCAAGGCGGCCAAAACCAAGGTGGTCAAAATCAA
GGCGGTTATCAACAGCAAGCGCCTAATCAAGGCGGTGGTCAGTCACAGCCTAAGCAGCCTCCAATGGCTGAGCCAGACTT
TGACTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54

100

0.554
  ssb Vibrio cholerae strain A1552

53.5

100

0.549
  ssb Neisseria meningitidis MC58

48.958

98.462

0.482
  ssb Neisseria gonorrhoeae MS11

48.958

98.462

0.482