Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1T39_RS04230 Genome accession   NZ_CP136697
Coordinates   849565..850092 (+) Length   175 a.a.
NCBI ID   WP_243262948.1    Uniprot ID   -
Organism   Sulfitobacter dubius strain CI.11.F.A3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 844565..855092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T39_RS04215 (R1T39_04215) - 845815..847944 (+) 2130 WP_317406227.1 ABC transporter ATP-binding protein -
  R1T39_RS04220 (R1T39_04220) - 848039..848566 (-) 528 WP_243262949.1 hypothetical protein -
  R1T39_RS04225 (R1T39_04225) - 848749..849360 (-) 612 WP_093926410.1 lytic transglycosylase domain-containing protein -
  R1T39_RS04230 (R1T39_04230) ssb 849565..850092 (+) 528 WP_243262948.1 single-stranded DNA-binding protein Machinery gene
  R1T39_RS04235 (R1T39_04235) aroB 850387..851502 (-) 1116 WP_243262947.1 3-dehydroquinate synthase -
  R1T39_RS04240 (R1T39_04240) - 851495..852091 (-) 597 WP_243262946.1 shikimate kinase -
  R1T39_RS04245 (R1T39_04245) - 852172..852321 (+) 150 WP_167360187.1 hypothetical protein -
  R1T39_RS04250 (R1T39_04250) - 852339..853973 (+) 1635 WP_317406228.1 hypothetical protein -
  R1T39_RS04255 (R1T39_04255) - 853970..854953 (+) 984 WP_243262944.1 tyrosine recombinase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 17990.52 Da        Isoelectric Point: 4.9838

>NTDB_id=892536 R1T39_RS04230 WP_243262948.1 849565..850092(+) (ssb) [Sulfitobacter dubius strain CI.11.F.A3]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGPGGGSGGGGGGGGYGGGGNDYGSGGGGNDYGGGYDSGPSSSGGG
AGGGGSRDLDDEIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=892536 R1T39_RS04230 WP_243262948.1 849565..850092(+) (ssb) [Sulfitobacter dubius strain CI.11.F.A3]
ATGGCCGGCTCAGTGAACAAAGTGATCCTAATCGGCAACCTCGGGCGCGACCCCGAGGTGCGGTCGTTCCAAAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCCACCTCGGAAACATGGAAAGACCGCAACACCGGTGAGCGCCGCGAGAAGACCGAAT
GGCATTCGGTGGCGATCTTTCAAGAAGGGCTCGTCCGCGTGGCCGAGCAATACCTCAAGAAGGGCTCCAAAGTGTATATC
GAGGGCCAATTGCAGACCCGCAAATGGCAAGACCAATCCGGCGCAGACCGCTATAGCACCGAAGTCGTGCTGCAAGGCTT
CGGCGGCACGTTGACCATGCTCGACGGTCCCGGCGGCGGCTCCGGCGGCGGCGGTGGTGGCGGCGGCTACGGTGGTGGCG
GCAATGACTACGGCAGTGGCGGCGGTGGCAATGACTACGGTGGCGGCTATGACAGCGGCCCGTCCTCCTCGGGCGGTGGG
GCCGGCGGCGGCGGAAGCCGTGACCTTGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.977

100

0.526
  ssb Glaesserella parasuis strain SC1401

46.032

100

0.497
  ssb Neisseria meningitidis MC58

41.899

100

0.429
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.429