Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1T44_RS00605 Genome accession   NZ_CP136695
Coordinates   133535..134191 (-) Length   218 a.a.
NCBI ID   WP_278421209.1    Uniprot ID   -
Organism   Cobetia amphilecti strain CI.11.F.A3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 128535..139191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T44_RS00585 (R1T44_00585) - 128855..129574 (-) 720 WP_317292388.1 lysophospholipid acyltransferase family protein -
  R1T44_RS00590 (R1T44_00590) - 129635..130519 (-) 885 WP_043334814.1 sugar nucleotide-binding protein -
  R1T44_RS00600 (R1T44_00600) - 130582..133090 (-) 2509 Protein_106 EAL domain-containing protein -
  R1T44_RS00605 (R1T44_00605) ssb 133535..134191 (-) 657 WP_278421209.1 single-stranded DNA-binding protein Machinery gene
  R1T44_RS00610 (R1T44_00610) - 134279..135694 (-) 1416 WP_054556904.1 MFS transporter -
  R1T44_RS00615 (R1T44_00615) uvrA 135903..138782 (+) 2880 WP_317292390.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23530.51 Da        Isoelectric Point: 5.2339

>NTDB_id=892514 R1T44_RS00605 WP_278421209.1 133535..134191(-) (ssb) [Cobetia amphilecti strain CI.11.F.A3]
MARGVNKVILIGNLGQDPEVRFTPSGSAVCNLNLATTDTWNDRQSGQRQERTEWHRVVMFNKLAEVAQQYVKKGSRLYIE
GRLQTRKWQDQNGNDRYSTEIVANDMQMLDTRGEGGGGNFAGGRPQQAPQQGGQQPAAAPQQGGQFGGQQPAPQQGGQFG
GQQAAPQQGGQFGGQQPAPQQGNNFGGQQPAQQNNSQNNNFGAPPAGSFDDFDDEIPF

Nucleotide


Download         Length: 657 bp        

>NTDB_id=892514 R1T44_RS00605 WP_278421209.1 133535..134191(-) (ssb) [Cobetia amphilecti strain CI.11.F.A3]
ATGGCTCGTGGCGTAAACAAGGTCATTCTGATCGGTAATCTCGGTCAAGACCCGGAAGTTCGCTTCACCCCGTCCGGTAG
TGCGGTGTGCAACCTGAACCTCGCGACGACGGACACCTGGAATGATCGCCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGTGTGGTGATGTTCAACAAGCTGGCTGAAGTGGCCCAGCAATATGTCAAGAAAGGCTCACGCCTGTATATCGAA
GGCCGCCTGCAGACGCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTACAGCACCGAAATCGTGGCCAACGACATGCA
GATGCTGGATACGCGTGGTGAAGGTGGCGGCGGCAACTTCGCTGGTGGTCGCCCGCAGCAGGCGCCTCAGCAGGGTGGCC
AGCAACCGGCCGCAGCCCCCCAGCAGGGTGGCCAGTTCGGTGGTCAGCAGCCGGCCCCGCAGCAAGGTGGCCAGTTCGGT
GGTCAGCAGGCGGCCCCTCAGCAAGGCGGTCAGTTCGGTGGTCAGCAGCCGGCCCCTCAGCAGGGCAACAACTTCGGTGG
CCAGCAGCCTGCCCAGCAGAACAACTCCCAGAACAACAATTTCGGTGCGCCGCCCGCGGGCAGCTTCGATGATTTCGATG
ATGAAATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.636

100

0.491
  ssb Glaesserella parasuis strain SC1401

44.091

100

0.445
  ssb Neisseria gonorrhoeae MS11

42.202

100

0.422
  ssb Neisseria meningitidis MC58

42.396

99.541

0.422