Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1T41_RS18220 Genome accession   NZ_CP136684
Coordinates   3769057..3769581 (+) Length   174 a.a.
NCBI ID   WP_062948888.1    Uniprot ID   -
Organism   Thalassospira lucentensis strain LC.270.F.C4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3764057..3774581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T41_RS18195 (R1T41_18200) - 3764098..3765396 (+) 1299 WP_317338380.1 extracellular solute-binding protein -
  R1T41_RS18200 (R1T41_18205) - 3765477..3766355 (+) 879 WP_062948896.1 ABC transporter permease subunit -
  R1T41_RS18205 (R1T41_18210) ugpE 3766367..3767221 (+) 855 WP_062948894.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
  R1T41_RS18210 (R1T41_18215) - 3767285..3768355 (+) 1071 WP_317338383.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -
  R1T41_RS18215 (R1T41_18220) - 3768524..3768997 (+) 474 WP_317338384.1 GAF domain-containing protein -
  R1T41_RS18220 (R1T41_18225) ssb 3769057..3769581 (+) 525 WP_062948888.1 single-stranded DNA-binding protein Machinery gene
  R1T41_RS18225 (R1T41_18230) - 3769726..3770598 (+) 873 WP_317338387.1 hypothetical protein -
  R1T41_RS18230 (R1T41_18235) - 3770702..3771121 (+) 420 WP_231858141.1 NUDIX domain-containing protein -
  R1T41_RS18235 (R1T41_18240) - 3771118..3771627 (-) 510 WP_317338388.1 YchJ family protein -
  R1T41_RS18240 (R1T41_18245) rpoH 3772253..3773122 (+) 870 WP_037992565.1 RNA polymerase sigma factor RpoH -
  R1T41_RS18245 (R1T41_18250) - 3773219..3773662 (-) 444 WP_317338389.1 NUDIX hydrolase -
  R1T41_RS18250 (R1T41_18255) - 3773652..3773918 (-) 267 WP_062948880.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18380.06 Da        Isoelectric Point: 5.0346

>NTDB_id=892470 R1T41_RS18220 WP_062948888.1 3769057..3769581(+) (ssb) [Thalassospira lucentensis strain LC.270.F.C4]
MAGSVNKVILVGNLGRDPEIRFTQAGKKIANFSIATSEQWRDRQSGERRERTEWHRIVVFNEGLADVVERFVKKGSKLYI
EGQLRTRKWQGQDGKDNYTTEIVLEGFNSNLTMLDNRGEGGGMGGGSGSGGGYGADNGGGYGGGSDAGWGNSGSSSGSGS
APAGAPDLDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=892470 R1T41_RS18220 WP_062948888.1 3769057..3769581(+) (ssb) [Thalassospira lucentensis strain LC.270.F.C4]
ATGGCTGGCAGTGTCAATAAAGTCATTCTCGTCGGGAACCTCGGCCGCGACCCTGAAATCCGTTTCACCCAGGCGGGCAA
AAAGATTGCCAATTTCAGCATTGCGACTTCGGAACAATGGCGTGACCGTCAGTCGGGTGAGCGCCGCGAGCGCACCGAAT
GGCATCGTATTGTCGTCTTCAACGAAGGCCTTGCCGACGTTGTCGAGCGCTTTGTGAAAAAAGGCAGCAAGCTTTACATC
GAAGGCCAGCTCCGCACCCGCAAGTGGCAGGGACAGGATGGCAAGGACAACTACACCACCGAGATCGTTCTTGAAGGCTT
TAACTCGAACCTGACCATGCTGGATAACCGCGGCGAAGGCGGCGGAATGGGTGGTGGTTCCGGATCGGGCGGCGGATACG
GTGCAGATAACGGTGGTGGATACGGCGGCGGTTCCGATGCTGGCTGGGGTAACAGCGGATCCTCCTCGGGTAGCGGTTCG
GCACCGGCTGGTGCACCGGATCTCGATGACGAGATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.5
  ssb Vibrio cholerae strain A1552

44.318

100

0.448
  ssb Neisseria meningitidis MC58

39.56

100

0.414
  ssb Neisseria gonorrhoeae MS11

38.462

100

0.402