Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RSQ48_RS16495 Genome accession   NZ_CP136682
Coordinates   3636082..3636594 (-) Length   170 a.a.
NCBI ID   WP_059318076.1    Uniprot ID   -
Organism   Alcaligenes sp. SJTW-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3631082..3641594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSQ48_RS16470 (RSQ48_16450) - 3631125..3631865 (+) 741 WP_059318078.1 TSUP family transporter -
  RSQ48_RS16475 (RSQ48_16455) - 3631961..3632668 (+) 708 WP_003805280.1 GntR family transcriptional regulator -
  RSQ48_RS16480 (RSQ48_16460) - 3632989..3633537 (-) 549 WP_059318077.1 ferritin-like domain-containing protein -
  RSQ48_RS16485 (RSQ48_16465) - 3634082..3634624 (+) 543 WP_415301997.1 Chromate resistance protein ChrB -
  RSQ48_RS16490 (RSQ48_16470) - 3634608..3635831 (+) 1224 WP_003805288.1 MFS transporter -
  RSQ48_RS16495 (RSQ48_16475) ssb 3636082..3636594 (-) 513 WP_059318076.1 single-stranded DNA-binding protein Machinery gene
  RSQ48_RS16500 (RSQ48_16480) - 3636853..3638064 (-) 1212 WP_003805292.1 MFS transporter -
  RSQ48_RS16505 (RSQ48_16485) uvrA 3638176..3641139 (+) 2964 WP_415302362.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18611.71 Da        Isoelectric Point: 5.3488

>NTDB_id=892466 RSQ48_RS16495 WP_059318076.1 3636082..3636594(-) (ssb) [Alcaligenes sp. SJTW-7]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGGEMGGGSMGGGEYGGGAPAPQRAQRPAPAQQAPQQAPRNPAPMSDN
LADMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=892466 RSQ48_RS16495 WP_059318076.1 3636082..3636594(-) (ssb) [Alcaligenes sp. SJTW-7]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGTGACCCAGAAGTACGCTACAGCGCGGAAGGTTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCCGGCGAACGCCGCGAGGAAACGGAATGGC
ACCGCGTGGTGTTCTACAACCGCCTGGCTGAAATTGCCGGTGAGTACCTTCGCAAAGGCCGTCCCGTCTACGTGGAAGGT
CGTCTGCGTACCCGTAAATGGACGGGTCAGGACGGACAGGAACGCTTCACGACTGAAATCATTGCCGAGCAAATGCAAAT
GCTGGGTGGTCGTGATGGTGGCGGCGAGATGGGTGGTGGCAGCATGGGCGGTGGCGAATATGGCGGTGGTGCGCCGGCTC
CTCAGCGCGCTCAGCGTCCTGCTCCTGCGCAGCAGGCACCGCAACAGGCCCCCCGCAACCCCGCACCCATGTCGGATAAT
CTGGCCGATATGGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.198

100

0.559
  ssb Glaesserella parasuis strain SC1401

48.663

100

0.535
  ssb Neisseria gonorrhoeae MS11

50.847

100

0.529
  ssb Neisseria meningitidis MC58

49.425

100

0.506