Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   AAHH81_RS02395 Genome accession   NZ_CP152418
Coordinates   465808..466857 (+) Length   349 a.a.
NCBI ID   WP_061753515.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20234287     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 460808..471857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHH81_RS02370 (AAHH81_02365) - 462031..462387 (+) 357 WP_061813611.1 hypothetical protein -
  AAHH81_RS02375 (AAHH81_02370) dnaJ 462789..463925 (+) 1137 WP_061813612.1 molecular chaperone DnaJ -
  AAHH81_RS02380 (AAHH81_02375) - 464305..464592 (-) 288 WP_000777753.1 hypothetical protein -
  AAHH81_RS02385 (AAHH81_02380) - 464602..465012 (-) 411 WP_001278301.1 HIT family protein -
  AAHH81_RS02390 (AAHH81_02385) pptA 465080..465811 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  AAHH81_RS02395 (AAHH81_02390) pptB 465808..466857 (+) 1050 WP_061753515.1 ABC transporter permease Regulator
  AAHH81_RS02400 (AAHH81_02395) - 467025..467354 (-) 330 WP_061753516.1 hypothetical protein -
  AAHH81_RS02405 (AAHH81_02400) - 467630..467968 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  AAHH81_RS02410 (AAHH81_02405) comE/blpR 467996..468688 (+) 693 WP_369917891.1 response regulator transcription factor Regulator
  AAHH81_RS02415 (AAHH81_02410) - 468702..470042 (+) 1341 WP_001017622.1 sensor histidine kinase -
  AAHH81_RS02420 (AAHH81_02415) blpC 470084..470239 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  AAHH81_RS02425 (AAHH81_02420) - 470296..471657 (-) 1362 WP_001069082.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40632.71 Da        Isoelectric Point: 10.0008

>NTDB_id=892466 AAHH81_RS02395 WP_061753515.1 465808..466857(+) (pptB) [Streptococcus pneumoniae strain 20234287]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSFRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLVLYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=892466 AAHH81_RS02395 WP_061753515.1 465808..466857(+) (pptB) [Streptococcus pneumoniae strain 20234287]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTTTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGTCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGCTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.143

100

0.473

  pptB Streptococcus thermophilus LMD-9

46.286

100

0.464