Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OCV04_RS09530 Genome accession   NZ_AP024893
Coordinates   2041678..2042268 (-) Length   196 a.a.
NCBI ID   WP_102940601.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2036678..2047268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS09510 - 2036951..2038216 (-) 1266 WP_171137516.1 DUF945 family protein -
  OCV04_RS09515 - 2038429..2040366 (+) 1938 WP_102940598.1 ATP-binding protein -
  OCV04_RS09520 - 2040380..2040877 (+) 498 WP_102940599.1 response regulator -
  OCV04_RS09525 - 2041065..2041613 (+) 549 WP_102940600.1 hypothetical protein -
  OCV04_RS09530 tfoX 2041678..2042268 (-) 591 WP_102940601.1 TfoX/Sxy family DNA transformation protein Regulator
  OCV04_RS09535 - 2042636..2043556 (+) 921 WP_171137517.1 HDOD domain-containing protein -
  OCV04_RS09540 - 2043576..2044481 (+) 906 WP_171137518.1 lysine exporter LysO family protein -
  OCV04_RS09545 - 2044616..2045128 (+) 513 WP_102940604.1 hypothetical protein -
  OCV04_RS09550 panP 2045254..2046900 (+) 1647 WP_102940605.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22613.87 Da        Isoelectric Point: 7.0835

>NTDB_id=89212 OCV04_RS09530 WP_102940601.1 2041678..2042268(-) (tfoX) [Vibrio plantisponsor strain CECT 7581]
MTMVERTFFDYVNKFGESQQRSMFGGIGLFQEDAMYALLTNDCIYIRGGEELDDQLTELGCEKYRHVKKQTVATVNYYDI
TDLYSSNYQELDAIVGTSIKNAVSQRVVQKSSLNRRLRDLPNMQLTLERMVKKSGVEDVDTFIKLGAPTVFNKVCQTYGN
DVDIKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQR

Nucleotide


Download         Length: 591 bp        

>NTDB_id=89212 OCV04_RS09530 WP_102940601.1 2041678..2042268(-) (tfoX) [Vibrio plantisponsor strain CECT 7581]
ATGACTATGGTAGAGCGAACATTTTTCGATTATGTAAATAAGTTTGGTGAAAGCCAACAGCGTTCAATGTTTGGTGGTAT
AGGTTTATTCCAAGAGGATGCTATGTATGCATTGTTGACCAACGACTGCATATATATCCGAGGTGGAGAGGAGTTAGACG
ATCAGTTAACCGAGTTAGGTTGTGAAAAGTACCGTCATGTGAAGAAACAAACTGTAGCAACAGTTAACTACTATGACATC
ACAGATCTGTACTCGAGTAATTACCAAGAATTAGATGCCATTGTTGGCACGTCAATTAAAAACGCAGTTTCTCAACGTGT
TGTGCAAAAATCGTCGCTTAATCGTCGTCTAAGAGATTTGCCTAACATGCAGCTTACATTGGAGAGAATGGTTAAGAAGT
CCGGTGTAGAAGATGTTGATACATTTATAAAGTTAGGTGCTCCAACGGTGTTTAACAAAGTCTGCCAGACCTATGGTAAT
GACGTTGATATTAAACTGTTGTGGAAGTTTGCAGGGGCGATAGAAGGAATCCATTGGAAGCTACTTCAAGAGCCTCGTAA
ACGCCAGTTGCTAGAGAGTTGCCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.196

98.98

0.724
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.196

98.98

0.724
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.196

98.98

0.724
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.196

98.98

0.724
  tfoX Vibrio cholerae strain A1552

73.196

98.98

0.724
  tfoX Vibrio campbellii strain DS40M4

64.615

99.49

0.643
  tfoX Vibrio parahaemolyticus RIMD 2210633

64.103

99.49

0.638
  tfoX Aliivibrio fischeri ES114

57.216

98.98

0.566

Multiple sequence alignment