Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R0513_RS07535 Genome accession   NZ_CP136638
Coordinates   1450921..1451232 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain S2-20     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1445921..1456232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS07515 (R0513_07515) ctsE 1446790..1448349 (-) 1560 WP_032596358.1 GspE/PulE family protein Machinery gene
  R0513_RS07520 (R0513_07520) ctsX 1448339..1448926 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R0513_RS07525 (R0513_07525) ctsP 1448930..1449538 (-) 609 WP_002874085.1 ATP-binding protein Machinery gene
  R0513_RS07530 (R0513_07530) ctsD 1449531..1450943 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R0513_RS07535 (R0513_07535) ctsR 1450921..1451232 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R0513_RS07540 (R0513_07540) nifJ 1451256..1454816 (-) 3561 WP_002868227.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R0513_RS07545 (R0513_07545) - 1454909..1455550 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=892097 R0513_RS07535 WP_002855438.1 1450921..1451232(-) (ctsR) [Campylobacter jejuni strain S2-20]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=892097 R0513_RS07535 WP_002855438.1 1450921..1451232(-) (ctsR) [Campylobacter jejuni strain S2-20]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1