Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAC934_RS06700 Genome accession   NZ_CP152362
Coordinates   1282715..1283851 (+) Length   378 a.a.
NCBI ID   WP_128422183.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277715..1288851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS06680 (AAC934_06680) uxaA 1278166..1279659 (+) 1494 WP_029317659.1 altronate dehydratase family protein -
  AAC934_RS06685 (AAC934_06685) yjnA 1279698..1280462 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  AAC934_RS06690 (AAC934_06690) yjoA 1280686..1281150 (-) 465 WP_014479541.1 DinB family protein -
  AAC934_RS06695 (AAC934_06695) yjoB 1281299..1282570 (+) 1272 WP_041337590.1 ATPase YjoB -
  AAC934_RS06700 (AAC934_06700) rapC 1282715..1283851 (+) 1137 WP_128422183.1 response regulator aspartate phosphatase RapA Regulator
  AAC934_RS06705 (AAC934_06705) phrA 1283841..1283975 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  AAC934_RS06710 (AAC934_06710) yjpA 1284006..1284263 (-) 258 WP_003232731.1 YciI family protein -
  AAC934_RS06715 (AAC934_06715) xlyB 1284383..1285336 (+) 954 WP_128422184.1 N-acetylmuramoyl-L-alanine amidase -
  AAC934_RS06720 (AAC934_06720) yjqA 1285376..1285753 (-) 378 WP_015715726.1 PH domain-containing protein -
  AAC934_RS06725 (AAC934_06725) pghB 1285859..1286461 (+) 603 WP_041344770.1 poly-gamma-glutamate hydrolase family protein -
  AAC934_RS06730 (AAC934_06730) xpdC 1286538..1287374 (+) 837 WP_342625159.1 manganese catalase family protein -
  AAC934_RS06735 (AAC934_06735) xkdA 1287418..1288014 (-) 597 WP_015715727.1 ImmA/IrrE family metallo-endopeptidase -
  AAC934_RS06740 (AAC934_06740) xre 1288177..1288518 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45047.21 Da        Isoelectric Point: 4.6857

>NTDB_id=892095 AAC934_RS06700 WP_128422183.1 1282715..1283851(+) (rapC) [Bacillus subtilis strain LP]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTEVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=892095 AAC934_RS06700 WP_128422183.1 1282715..1283851(+) (rapC) [Bacillus subtilis strain LP]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGTTGGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCTTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACAGAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415