Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   R0513_RS07525 Genome accession   NZ_CP136638
Coordinates   1448930..1449538 (-) Length   202 a.a.
NCBI ID   WP_002874085.1    Uniprot ID   A0A693TRH8
Organism   Campylobacter jejuni strain S2-20     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443930..1454538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS07500 (R0513_07500) - 1444087..1444851 (+) 765 WP_002912476.1 TIGR02757 family protein -
  R0513_RS07505 (R0513_07505) - 1444855..1445619 (+) 765 WP_002855821.1 TSUP family transporter -
  R0513_RS07510 (R0513_07510) ctsF 1445612..1446793 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  R0513_RS07515 (R0513_07515) ctsE 1446790..1448349 (-) 1560 WP_032596358.1 GspE/PulE family protein Machinery gene
  R0513_RS07520 (R0513_07520) ctsX 1448339..1448926 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R0513_RS07525 (R0513_07525) ctsP 1448930..1449538 (-) 609 WP_002874085.1 ATP-binding protein Machinery gene
  R0513_RS07530 (R0513_07530) ctsD 1449531..1450943 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R0513_RS07535 (R0513_07535) ctsR 1450921..1451232 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23800.82 Da        Isoelectric Point: 9.9061

>NTDB_id=892095 R0513_RS07525 WP_002874085.1 1448930..1449538(-) (ctsP) [Campylobacter jejuni strain S2-20]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQDQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=892095 R0513_RS07525 WP_002874085.1 1448930..1449538(-) (ctsP) [Campylobacter jejuni strain S2-20]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGATCAGAGTTTAATCATTCTCGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A693TRH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.01

100

0.99