Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   R0513_RS07520 Genome accession   NZ_CP136638
Coordinates   1448339..1448926 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain S2-20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443339..1453926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS07500 (R0513_07500) - 1444087..1444851 (+) 765 WP_002912476.1 TIGR02757 family protein -
  R0513_RS07505 (R0513_07505) - 1444855..1445619 (+) 765 WP_002855821.1 TSUP family transporter -
  R0513_RS07510 (R0513_07510) ctsF 1445612..1446793 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  R0513_RS07515 (R0513_07515) ctsE 1446790..1448349 (-) 1560 WP_032596358.1 GspE/PulE family protein Machinery gene
  R0513_RS07520 (R0513_07520) ctsX 1448339..1448926 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R0513_RS07525 (R0513_07525) ctsP 1448930..1449538 (-) 609 WP_002874085.1 ATP-binding protein Machinery gene
  R0513_RS07530 (R0513_07530) ctsD 1449531..1450943 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R0513_RS07535 (R0513_07535) ctsR 1450921..1451232 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=892094 R0513_RS07520 WP_002851370.1 1448339..1448926(-) (ctsX) [Campylobacter jejuni strain S2-20]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=892094 R0513_RS07520 WP_002851370.1 1448339..1448926(-) (ctsX) [Campylobacter jejuni strain S2-20]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1