Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RZ523_RS19235 Genome accession   NZ_CP136596
Coordinates   4060018..4061538 (+) Length   506 a.a.
NCBI ID   WP_283009276.1    Uniprot ID   -
Organism   Cronobacter malonaticus strain B11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4055018..4066538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ523_RS19215 - 4056579..4057508 (-) 930 WP_004387276.1 branched-chain amino acid transaminase -
  RZ523_RS19220 ilvM 4057529..4057786 (-) 258 WP_007766319.1 acetolactate synthase 2 small subunit -
  RZ523_RS19225 ilvG 4057783..4059429 (-) 1647 WP_283009275.1 acetolactate synthase 2 catalytic subunit -
  RZ523_RS19230 ilvL 4059568..4059666 (-) 99 WP_071601137.1 ilv operon leader peptide -
  RZ523_RS19235 comM 4060018..4061538 (+) 1521 WP_283009276.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RZ523_RS19240 - 4061618..4061956 (-) 339 WP_004387280.1 DUF413 domain-containing protein -
  RZ523_RS19245 hdfR 4062064..4062897 (+) 834 WP_283009277.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54862.21 Da        Isoelectric Point: 7.7537

>NTDB_id=891853 RZ523_RS19235 WP_283009276.1 4060018..4061538(+) (comM) [Cronobacter malonaticus strain B11]
MSLSVIHTRAALGVKAPLVTVEVHISTGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAHHL
QEVCAFLEGKTQLECAQPSDFEFKEPAGDLSEVIGQSQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDISLEIPLPPPGMLSQVGQSG
ESSAQVRKRVMESRECQFARQGKLNAMLDNGEIRQFCLLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQSQRI
GRKHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=891853 RZ523_RS19235 WP_283009276.1 4060018..4061538(+) (comM) [Cronobacter malonaticus strain B11]
ATGTCGTTATCGGTTATCCATACTCGTGCTGCGCTTGGAGTAAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCAC
CGGGCTACCCGGCCTGACAATCGTCGGCCTGCCAGAAACTACCGTTAAAGAGGCAAGAGATCGTGTACGCAGCGCGCTCA
TTAATAGCGGTTATGAGTTCCCGGCTAAAAAGATAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAGGGTGGACGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCGTCTGAGCAATTAAGCGCATCTCATCTCGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACCGGCGCGCTGAGAGGCGTTCCCGGTGCAATTTCAGCCGCCATAGAGGCTCTGGGATGTAAAA
GAAAAATTATCGTCGCGCATGATAATGGCCCTGAGGTGGGACTCATCAATAAAGAAGGTTGCCTTGTGGCTCATCATTTA
CAGGAGGTCTGCGCCTTTCTGGAAGGGAAAACGCAGCTCGAATGCGCCCAACCATCTGACTTTGAATTCAAAGAACCTGC
CGGAGATCTGAGTGAGGTCATTGGGCAATCTCAGGGAAAACGCGCACTGGAGTTAACCGCAGCGGGCGGGCATAACCTGC
TTTTTATTGGGCCTCCCGGTACAGGTAAAACGATGCTTGCCAGCAGACTCAATGGGTTACTACCCCCTCTGAGCGACCAG
GAAGCCCTTGAGAGCGCTGCGATACTAAGCCTGGTTAACCCCGTCTCTTTGCACCATCAATGGCGTCAGCGTCCATTCAG
AGCCCCTCACCATAGCGCGTCGCTGAATGCCATGGTGGGTGGAGGAGCCATTCCTGCACCTGGAGAAATCTCACTTGCCC
ATAATGGCGTGCTATTTCTGGATGAGTTACCTGAATTCGAGCGTCGCGTGTTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAGATTCATCTTTCACGCACCCGGGCAAAACTAACGTATCCGGCACGCTTTCAACTTATTGCTGCTATGAATCCCAG
CCCAACAGGACACTACAAAGGAAACCATAACCGCTGCTCGCCAGAGCAGACGCTGCGTTATCTCGGTCGGCTTTCCGGGC
CATTCCTTGACAGGTTTGATATCTCGCTTGAAATTCCGCTGCCTCCGCCGGGTATGCTTAGTCAGGTGGGACAGTCTGGC
GAAAGCAGCGCGCAAGTGAGGAAACGTGTAATGGAAAGCAGAGAATGTCAGTTTGCTCGGCAGGGCAAGCTTAACGCCAT
GCTGGACAATGGGGAGATACGTCAGTTTTGTTTGCTTAGCCCGGAGGACGCGCAGTGGCTGGAGGCAGCGCTAATCAAAC
TGGGACTGTCGGTTCGCGCATGGCAGCGCTTACTCAAAGTGGCGCGTACTATCGCTGATTGTGAACAGAGTCAAAGGATT
GGCCGTAAACATCTGCAGGAGGCACTGAGCTATCGTGCGATAGACAGGATGCTGGCGCATTTGCAAAACATGATGGCATA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.1

100

0.615
  comM Glaesserella parasuis strain SC1401

60.355

100

0.605
  comM Vibrio campbellii strain DS40M4

60.558

99.209

0.601
  comM Vibrio cholerae strain A1552

60.159

99.209

0.597
  comM Legionella pneumophila str. Paris

47.984

98.024

0.47
  comM Legionella pneumophila strain ERS1305867

47.984

98.024

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443