Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   AAEU35_RS08990 Genome accession   NZ_CP152294
Coordinates   1785048..1785713 (-) Length   221 a.a.
NCBI ID   WP_033900770.1    Uniprot ID   -
Organism   Lactococcus lactis strain Q13     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1780048..1790713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS08970 - 1780539..1781669 (+) 1131 WP_317141327.1 aminotransferase -
  AAEU35_RS08975 - 1781861..1783354 (+) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  AAEU35_RS08980 - 1783433..1783924 (+) 492 WP_010906273.1 prolyl-tRNA synthetase associated domain-containing protein -
  AAEU35_RS08985 dinB 1784003..1785097 (+) 1095 WP_023164600.1 DNA polymerase IV -
  AAEU35_RS08990 cclA/cilC 1785048..1785713 (-) 666 WP_033900770.1 A24 family peptidase Machinery gene
  AAEU35_RS08995 - 1785880..1786326 (+) 447 WP_058223018.1 Dps family protein -
  AAEU35_RS09000 - 1786408..1786794 (-) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  AAEU35_RS09005 - 1786797..1787768 (-) 972 WP_058223017.1 ROK family glucokinase -
  AAEU35_RS09010 - 1787802..1788023 (-) 222 WP_010906270.1 YqgQ family protein -
  AAEU35_RS09015 - 1788215..1788733 (+) 519 WP_235586152.1 hypothetical protein -
  AAEU35_RS09020 - 1788709..1788906 (+) 198 WP_235586153.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  AAEU35_RS09025 - 1789241..1789570 (+) 330 WP_039116243.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25650.84 Da        Isoelectric Point: 8.8481

>NTDB_id=891838 AAEU35_RS08990 WP_033900770.1 1785048..1785713(-) (cclA/cilC) [Lactococcus lactis strain Q13]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRVEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=891838 AAEU35_RS08990 WP_033900770.1 1785048..1785713(-) (cclA/cilC) [Lactococcus lactis strain Q13]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGTTCCTTTTTTGGCTTAATAGTTGACCGTATTCCCCTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGTTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGGCACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

37.443

99.095

0.371
  cclA/cilC Streptococcus pneumoniae Rx1

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae D39

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae R6

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae TIGR4

37.209

97.285

0.362