Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RZV13_RS16835 Genome accession   NZ_CP136579
Coordinates   3972748..3973806 (-) Length   352 a.a.
NCBI ID   WP_039409920.1    Uniprot ID   A0AB34P8V9
Organism   Xanthomonas cannabis strain DAR41374     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3967748..3978806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV13_RS16815 (RZV13_16760) - 3968805..3970769 (-) 1965 WP_228335586.1 type IV pilus secretin PilQ family protein -
  RZV13_RS16820 (RZV13_16765) - 3970789..3971322 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  RZV13_RS16825 (RZV13_16770) - 3971319..3971984 (-) 666 WP_228335559.1 type 4a pilus biogenesis protein PilO -
  RZV13_RS16830 (RZV13_16775) - 3971981..3972748 (-) 768 WP_184556273.1 PilN domain-containing protein -
  RZV13_RS16835 (RZV13_16780) comM 3972748..3973806 (-) 1059 WP_039409920.1 pilus assembly protein PilM Machinery gene
  RZV13_RS16840 (RZV13_16785) - 3973926..3976448 (+) 2523 WP_179455774.1 penicillin-binding protein 1A -
  RZV13_RS16845 (RZV13_16790) - 3976684..3977334 (+) 651 WP_047695640.1 hypothetical protein -
  RZV13_RS16850 (RZV13_16795) - 3977465..3978754 (-) 1290 WP_039409911.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37640.24 Da        Isoelectric Point: 4.3924

>NTDB_id=891688 RZV13_RS16835 WP_039409920.1 3972748..3973806(-) (comM) [Xanthomonas cannabis strain DAR41374]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=891688 RZV13_RS16835 WP_039409920.1 3972748..3973806(-) (comM) [Xanthomonas cannabis strain DAR41374]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
GCGCAGCGGGAATCGTTTCCGCGTGGAGCACTACGCGGTTGAACCGTTGCCGCCCAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTCGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCC
GTGGCTGGCTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGACCTGGACGACAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGTCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTGGGT
GGCCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCGTTCGCCCTGGTCGCCAGCGAACTGCCGGT
CGCCGCCGATGCGGTGGTTGCGCTGGTCGACATCGGCGCCACCATGACCACGCTCAGCGTGCTGCGCTCCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTATGGCCTGACCTACGAAGAA
GCCGGCCTGGCCAAGCGCCAGGGTGGGCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATTAGCCGTTTGCTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GGTGCGCCGCGCTGTCACGCCTGCCGGAGATGGTGGAAGAGCAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTCGCA
CAGATGACGCTGGGCCCAAAGGTTCAGGCCCATGCGCTGGCGCTCGATGCGCCCGCCTTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474