Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RSE14_RS07360 Genome accession   NZ_CP136573
Coordinates   1484775..1485305 (-) Length   176 a.a.
NCBI ID   WP_324076694.1    Uniprot ID   -
Organism   MAG: Erythrobacter sp. isolate GU0601_MAG4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1479775..1490305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSE14_RS07330 (RSE14_07330) - 1480039..1481118 (-) 1080 WP_324076683.1 acyltransferase -
  RSE14_RS07335 (RSE14_07335) hslV 1481196..1481759 (-) 564 WP_324076686.1 ATP-dependent protease subunit HslV -
  RSE14_RS07340 (RSE14_07340) - 1481799..1482260 (-) 462 WP_324076855.1 outer membrane protein assembly factor BamE -
  RSE14_RS07345 (RSE14_07345) - 1482535..1483062 (+) 528 WP_324076687.1 ubiquinol-cytochrome C chaperone family protein -
  RSE14_RS07350 (RSE14_07350) - 1483059..1483592 (+) 534 WP_324076689.1 DUF177 domain-containing protein -
  RSE14_RS07355 (RSE14_07355) - 1483589..1484608 (-) 1020 WP_324076692.1 TonB family protein -
  RSE14_RS07360 (RSE14_07360) ssb 1484775..1485305 (-) 531 WP_324076694.1 single-stranded DNA-binding protein Machinery gene
  RSE14_RS07365 (RSE14_07365) - 1485426..1486103 (-) 678 WP_324076696.1 COQ9 family protein -
  RSE14_RS07370 (RSE14_07370) - 1486105..1486737 (-) 633 WP_324076698.1 ankyrin repeat domain-containing protein -
  RSE14_RS07375 (RSE14_07375) - 1486845..1487471 (+) 627 WP_324076699.1 SCO family protein -
  RSE14_RS07380 (RSE14_07380) - 1487459..1487941 (+) 483 WP_324076701.1 YcgN family cysteine cluster protein -
  RSE14_RS07385 (RSE14_07385) - 1487938..1488660 (+) 723 WP_324076702.1 SprT family zinc-dependent metalloprotease -
  RSE14_RS07390 (RSE14_07390) - 1488693..1489139 (+) 447 WP_324076703.1 hypothetical protein -
  RSE14_RS07395 (RSE14_07395) ribD 1489136..1490119 (+) 984 WP_324076856.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 17852.49 Da        Isoelectric Point: 4.9561

>NTDB_id=891618 RSE14_RS07360 WP_324076694.1 1484775..1485305(-) (ssb) [MAG: Erythrobacter sp. isolate GU0601_MAG4]
MAGSLNKVMLIGNLGADPEVRSFQNGGKVCNLRIATTESWKDRNSGEKQERTEWHTVAIFNEGLAGVAERFLKKGSKVYI
EGQLQTRKWQDQNGNDRYSTEVVLRGPNSVMTMLDGAGGGGMGGGGGRSGGGSYGGGGGGGWDQGGGSSGGGGGGFGGGG
APAGGGYDDLDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=891618 RSE14_RS07360 WP_324076694.1 1484775..1485305(-) (ssb) [MAG: Erythrobacter sp. isolate GU0601_MAG4]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATCGGCAATCTGGGCGCCGATCCGGAGGTTCGCAGCTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACCACTGAAAGCTGGAAGGACCGCAATTCGGGCGAAAAGCAGGAGCGCACCGAGT
GGCACACCGTGGCGATCTTTAACGAAGGTCTGGCGGGCGTTGCCGAGCGGTTCCTTAAGAAGGGCTCGAAGGTCTATATC
GAAGGCCAGCTCCAGACCCGCAAGTGGCAGGACCAGAACGGCAATGACCGCTATTCGACCGAAGTCGTGCTGCGCGGACC
GAACTCGGTGATGACCATGCTCGACGGTGCTGGCGGTGGCGGTATGGGCGGCGGCGGTGGCCGTTCGGGCGGCGGCAGCT
ACGGCGGCGGCGGTGGCGGCGGCTGGGATCAGGGCGGCGGCTCGTCGGGCGGCGGCGGCGGCGGATTTGGGGGCGGCGGC
GCGCCTGCTGGCGGCGGCTACGACGATCTCGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.162

100

0.494
  ssb Vibrio cholerae strain A1552

49.133

98.295

0.483
  ssb Neisseria meningitidis MC58

39.106

100

0.398
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.398