Detailed information NTG0891478

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RYH83_RS02045
• Genome accession: NZ_CP136539
• Coordinates: 444004..445152 (+)
• Length: 382 a.a.
• NCBI ID: WP_003100959.1
• Uniprot ID: G3XCX3
• Organism: Pseudomonas aeruginosa strain GOM9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 439004..450152

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RYH83_RS02020 (RYH83_02020)	-	440155..440451 (-)	297	WP_031628073.1	DUF167 domain-containing protein	-
RYH83_RS02025 (RYH83_02025)	-	440448..441041 (-)	594	WP_003084544.1	YggT family protein	-
RYH83_RS02030 (RYH83_02030)	proC	441052..441873 (-)	822	WP_003084546.1	pyrroline-5-carboxylate reductase	-
RYH83_RS02035 (RYH83_02035)	-	441885..442577 (-)	693	WP_003084549.1	YggS family pyridoxal phosphate-dependent enzyme	-
RYH83_RS02040 (RYH83_02040)	pilT	442792..443826 (+)	1035	WP_003084552.1	type IV pilus twitching motility protein PilT	Machinery gene
RYH83_RS02045 (RYH83_02045)	pilU	444004..445152 (+)	1149	WP_003100959.1	type IV pilus ATPase PilU	Machinery gene
RYH83_RS02050 (RYH83_02050)	czcD	445160..446059 (-)	900	WP_003100957.1	CDF family zinc transporter CzcD	-
RYH83_RS02055 (RYH83_02055)	-	446213..446617 (+)	405	WP_003084560.1	NINE protein	-
RYH83_RS02060 (RYH83_02060)	-	446860..448233 (+)	1374	WP_003160915.1	pyridoxal-phosphate dependent enzyme	-
RYH83_RS02065 (RYH83_02065)	-	448230..449414 (+)	1185	WP_003110017.1	cystathionine gamma-synthase	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 42532.81 Da
• Isoelectric Point: 6.7792

>NTDB_id=891478 RYH83_RS02045 WP_003100959.1 444004..445152(+) (pilU) [Pseudomonas aeruginosa strain GOM9]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGRVMPVTKTPLSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEELKLPEILKKLALTKRGLVIFVGATGTGKSTSLAAMIGYRNKNSTGHIISIED
PIEYIHQHQGCIVTQREVGLDTDSFEVALKNTLRQAPDVIMIGEVRSRETMDHAVAFAETGHLCLATLHANNANQALERI
IHFFPADRHGQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLLNTPLAADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYQLYTQGEITYEDALAHADSANDLRLMIKLGSESDADHLSSLTQGLSLEITDDDPAGRRFR

Nucleotide

• Length: 1149 bp

>NTDB_id=891478 RYH83_RS02045 WP_003100959.1 444004..445152(+) (pilU) [Pseudomonas aeruginosa strain GOM9]
ATGGAATTCGAAAAGCTGCTGCGCCTGATGGTGGAAAAGGGCGGCTCCGACCTGTTCATCACCGCCGGCGTACCGCCGTC
GATGAAGGTCAACGGCCGGGTGATGCCGGTGACCAAGACGCCGCTGTCGCCGGAGCAGACCCGCGAGACCGTGCTAGGCG
TGATGAACGAGCAGCAGCGCCGCGATTTCGCCGAGAACCATGAGTGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGGGTCAGTGCCTTCTACCAGCGCAACCTGGTGGGCATGGTATTGCGCCGGATCGAGACCAACATCCCGACCCTGGA
AGAGCTGAAGCTCCCGGAAATCCTCAAGAAGCTGGCGCTGACCAAGCGCGGCCTGGTGATCTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAACTCCACCGGGCACATCATCTCCATCGAGGAC
CCGATCGAGTACATCCACCAGCACCAGGGCTGCATCGTCACCCAGCGCGAGGTGGGGCTGGACACCGACTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCTCGCGGGAGACCATGGACCACG
CCGTGGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCGACCCTGCACGCGAACAACGCCAACCAGGCGCTGGAGCGGATC
ATCCACTTCTTCCCGGCCGACCGTCATGGCCAGGTGTGGATGGACCTGTCGCTGAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCCGACGGCAAGGGGCGGCGGGCGGTGATCGAGGTGCTGCTGAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAGCCGCTGATGAAGCGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACCAGCTCTACACCCAGGGCGAGATCACCTACGAGGACGCCCTGGCCCACGCCGACTCGGCCAACGACCTGCGCCT
GATGATCAAGCTCGGTTCGGAAAGCGACGCCGACCACCTGTCGAGCCTGACCCAGGGCCTGAGCCTGGAAATCACCGACG
ACGACCCTGCCGGCCGGCGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-270)

3D structure

• AlphaFold DB: G3XCX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	88.482	100	0.885
pilU	Acinetobacter baylyi ADP1	65.266	93.455	0.61
pilU	Vibrio cholerae strain A1552	60.286	91.623	0.552
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.068	88.743	0.382