Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU30_RS01540 Genome accession   NZ_AP024887
Coordinates   322887..323435 (+) Length   182 a.a.
NCBI ID   WP_077315278.1    Uniprot ID   A0A1R4B7I3
Organism   Vibrio palustris strain CECT 9027     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 317887..328435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS01525 uvrA 318024..320846 (-) 2823 WP_077315275.1 excinuclease ABC subunit UvrA -
  OCU30_RS01530 galU 320975..321856 (-) 882 WP_077315276.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU30_RS01535 - 321969..322835 (-) 867 WP_077315277.1 response regulator transcription factor -
  OCU30_RS01540 ssb 322887..323435 (+) 549 WP_077315278.1 single-stranded DNA-binding protein Machinery gene
  OCU30_RS01545 - 323484..324254 (-) 771 WP_077315279.1 replication initiation protein -
  OCU30_RS01550 csrD 324931..326931 (+) 2001 WP_077315280.1 RNase E specificity factor CsrD -
  OCU30_RS01555 - 326931..328370 (+) 1440 WP_077315281.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19985.07 Da        Isoelectric Point: 5.2257

>NTDB_id=89131 OCU30_RS01540 WP_077315278.1 322887..323435(+) (ssb) [Vibrio palustris strain CECT 9027]
MASRGVNKVILIGNLGSDPEVRYMPNGGAVANITLATSDSWRDKATGEQREKTEWHRVALFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRNGGAPQQGSGMGGQPSQQGGWGQPQQPAQQRQQPVQQQQQSAP
QAAPQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=89131 OCU30_RS01540 WP_077315278.1 322887..323435(+) (ssb) [Vibrio palustris strain CECT 9027]
ATGGCAAGCCGTGGTGTGAACAAAGTAATTTTAATTGGTAACTTAGGTAGCGATCCTGAAGTTCGTTATATGCCAAATGG
TGGTGCAGTTGCAAACATCACTCTCGCAACGTCAGATTCATGGCGTGATAAGGCAACAGGTGAGCAACGTGAAAAGACCG
AATGGCACCGTGTGGCTCTGTTTGGTAAGCTTGCTGAAATCGCAGGTGAGTATCTGCGCAAAGGCTCTCAAGTTTACATT
GAAGGTCAACTGCAAACGCGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTATACAACTGAAGTCGTTGTGCAAGGCTT
TAATGGTGTAATGCAGATGCTTGGTGGCCGCAATGGTGGGGCACCACAGCAAGGTTCTGGCATGGGAGGTCAACCCTCTC
AGCAAGGTGGTTGGGGACAGCCGCAACAGCCTGCACAGCAACGCCAGCAACCTGTACAGCAGCAACAGCAGTCGGCTCCG
CAAGCGGCGCCACAGCAACCACAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4B7I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.522

100

0.824
  ssb Glaesserella parasuis strain SC1401

54.839

100

0.56
  ssb Neisseria meningitidis MC58

48.108

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.486

100

0.473

Multiple sequence alignment