Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RTE98_RS08510 Genome accession   NZ_CP136501
Coordinates   1836154..1836645 (+) Length   163 a.a.
NCBI ID   WP_063544073.1    Uniprot ID   A0AA47E3M5
Organism   Stutzerimonas frequens strain L27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1831154..1841645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE98_RS08500 (RTE98_08500) uvrA 1831655..1834492 (-) 2838 WP_316958998.1 excinuclease ABC subunit UvrA -
  RTE98_RS08505 (RTE98_08505) - 1834624..1835991 (+) 1368 WP_316958999.1 MFS transporter -
  RTE98_RS08510 (RTE98_08510) ssb 1836154..1836645 (+) 492 WP_063544073.1 single-stranded DNA-binding protein Machinery gene
  RTE98_RS08515 (RTE98_08515) - 1836657..1837541 (+) 885 WP_017244908.1 sugar nucleotide-binding protein -
  RTE98_RS08520 (RTE98_08520) - 1837534..1838463 (+) 930 WP_316959000.1 NAD-dependent epimerase/dehydratase family protein -
  RTE98_RS08525 (RTE98_08525) - 1838534..1839211 (-) 678 WP_110778140.1 OmpW family protein -
  RTE98_RS08530 (RTE98_08530) - 1839396..1840181 (+) 786 WP_156244172.1 DUF3450 domain-containing protein -
  RTE98_RS08535 (RTE98_08535) - 1840178..1841524 (+) 1347 WP_316959001.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18341.41 Da        Isoelectric Point: 5.9492

>NTDB_id=891201 RTE98_RS08510 WP_063544073.1 1836154..1836645(+) (ssb) [Stutzerimonas frequens strain L27]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGNSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=891201 RTE98_RS08510 WP_063544073.1 1836154..1836645(+) (ssb) [Stutzerimonas frequens strain L27]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAAGACAAGCAGACCGGTCAGCTGCAAGAGCGTACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGTCGCCTGCAGACGCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAGATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGTGGCAATTCCGACGATGCGCCACGCCAGCCGCGCCCGCAGCGCGAGCCGCAGCAGG
CCCCGCGTCAGCAGGCCCAGCCGCAGCAGCCTGCTGCCCGGCAGCAGCCCGCGCCGGACTATGACAGCTTCGACGACGAC
ATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.521
  ssb Neisseria meningitidis MC58

47.159

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.509