Detailed information NTG0891198

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: RTE98_RS07830
• Genome accession: NZ_CP136501
• Coordinates: 1704780..1705844 (+)
• Length: 354 a.a.
• NCBI ID: WP_110778198.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain L27
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1699780..1710844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RTE98_RS07815 (RTE98_07815)	-	1699904..1700698 (+)	795	WP_316958968.1	thermonuclease family protein	-
RTE98_RS07820 (RTE98_07820)	-	1700842..1702110 (+)	1269	WP_102839582.1	malic enzyme-like NAD(P)-binding protein	-
RTE98_RS07825 (RTE98_07825)	-	1702178..1704598 (-)	2421	WP_316958969.1	penicillin-binding protein 1A	-
RTE98_RS07830 (RTE98_07830)	comM	1704780..1705844 (+)	1065	WP_110778198.1	pilus assembly protein PilM	Machinery gene
RTE98_RS07835 (RTE98_07835)	-	1705844..1706416 (+)	573	WP_063539613.1	PilN domain-containing protein	-
RTE98_RS07840 (RTE98_07840)	pilO	1706413..1707036 (+)	624	WP_200596014.1	type 4a pilus biogenesis protein PilO	-
RTE98_RS07845 (RTE98_07845)	pilP	1707033..1707560 (+)	528	WP_125868795.1	type 4a pilus biogenesis lipoprotein PilP	-
RTE98_RS07850 (RTE98_07850)	pilQ	1707614..1709704 (+)	2091	WP_316958970.1	type IV pilus secretin PilQ	Machinery gene
RTE98_RS07855 (RTE98_07855)	aroK	1709710..1710255 (+)	546	WP_316958971.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37768.18 Da
• Isoelectric Point: 4.6346

>NTDB_id=891198 RTE98_RS07830 WP_110778198.1 1704780..1705844(+) (comM) [Stutzerimonas frequens strain L27]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKTIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERSYDLLAPQLGSAHGELTVAVVDIGATMTTLSVLHNGRTIYSREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHLIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPSLMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=891198 RTE98_RS07830 WP_110778198.1 1704780..1705844(+) (comM) [Stutzerimonas frequens strain L27]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTTCTCGAATT
AAGTCGATCGGGGAACCGCTACCGGGTTGAGGCTTATGCGGTTGAGCCGCTCCCACCAAATGCCGTGGTCGAAAAGAACA
TCGCTGAACTGGAAGGCGTTGGCCAGGCTCTGCAACGTGTGGTCGCAAAGGCTAAGACCGGCTGCAAGTCAGCCGTGGTA
GCTGTCTCCGGTTCAGCGGTGATCACCAAGACGATCGAGATGGACGCCGGGCTGTCTGACGAGGAGCTGGAAAACCAGCT
GAAGATCGAAGCCGACCAATATATTCCCTATCCGTTGGAAGAGGTGGCGATCGACTTCGAGGTCCAGGGCCCCGCGCCGC
GTGCGCCCGGTCGGGTCGAGGTTCTGCTCGCTGCCTGTCGCAAGGAAAACGTCGAAGTGCGCGAGGCGGCACTGGCTCTG
GCCGGGCTCACCGCGAAGGTCGTTGATGTCGAGGCCTATGCGCTCGAGCGCTCCTATGATCTTCTGGCGCCGCAGTTGGG
GAGCGCGCATGGTGAACTGACCGTCGCTGTCGTGGATATCGGCGCAACGATGACGACTCTGAGCGTCCTGCATAACGGAC
GCACCATATACAGTCGTGAGCAATTGTTCGGGGGGCGGCAGCTGACGGAGGAAATCCAACGCCGTTATGGGCTGTCACAA
GAGGAGGCTGGCCTCGCTAAAAAGCAGGGAGGGCTTCCTGATGACTACGACAGTGAGGTTTTGCTTCCGTTCAAAGAAGC
GGTCGTTCAGCAGGTCTCACGCTCGCTGCAATTCTTCTTCGCTGCTGGGCAGTTTCATGATGTCGATTGCATTCTGCTTG
CTGGTGGAACGGCTTCCATCCCGGGGCTTGATCATCTCATTCAGCAGAAGATCGGCACCCAGACTCTAGTTGCCAATCCG
TTTGCCGATATGGCTTTGAGTAGCAAGGTCAACGCAGGCGCGCTGGCCAGTGATGCGCCCTCGCTGATGATTGCGTGTGG
GTTGGCGCTAAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	56.497	100	0.565
pilM	Acinetobacter baumannii D1279779	56.497	100	0.565
comM	Acinetobacter baylyi ADP1	53.672	100	0.537
pilM	Legionella pneumophila strain ERS1305867	46.893	100	0.469