Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RTE98_RS01695 Genome accession   NZ_CP136501
Coordinates   360388..361725 (+) Length   445 a.a.
NCBI ID   WP_152481770.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain L27     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 355388..366725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE98_RS01670 (RTE98_01670) pgeF 355419..356156 (-) 738 WP_316958465.1 peptidoglycan editing factor PgeF -
  RTE98_RS01675 (RTE98_01675) rluD 356153..357127 (-) 975 WP_063541901.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RTE98_RS01680 (RTE98_01680) - 357331..358320 (+) 990 WP_063541899.1 outer membrane protein assembly factor BamD -
  RTE98_RS01685 (RTE98_01685) - 358442..358675 (+) 234 WP_110775887.1 PP0621 family protein -
  RTE98_RS01690 (RTE98_01690) pilS 358665..360260 (+) 1596 WP_316958466.1 PAS domain-containing sensor histidine kinase Regulator
  RTE98_RS01695 (RTE98_01695) pilR 360388..361725 (+) 1338 WP_152481770.1 sigma-54 dependent transcriptional regulator Regulator
  RTE98_RS01700 (RTE98_01700) - 361769..362824 (-) 1056 WP_125867020.1 DUF2333 family protein -
  RTE98_RS01705 (RTE98_01705) - 363039..364634 (+) 1596 WP_102838687.1 PleD family two-component system response regulator -
  RTE98_RS01710 (RTE98_01710) - 364743..366704 (+) 1962 WP_316958467.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49568.95 Da        Isoelectric Point: 6.2057

>NTDB_id=891188 RTE98_RS01695 WP_152481770.1 360388..361725(+) (pilR) [Stutzerimonas frequens strain L27]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLDLVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAESPVDNRLLGSSPPMKVLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSDKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADAM
LRRLAQECGDSSARLHPDALAKLENYRFPGNVRELENMLERAYTLCEDDEIKAGDLRLADSPGLSENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=891188 RTE98_RS01695 WP_152481770.1 360388..361725(+) (pilR) [Stutzerimonas frequens strain L27]
ATGACCGCGCGCCAGAAAGCACTGATCATCGATGACGAGCCCGATATCCGCGAGTTGCTGGAGATCACCCTCGGGCGGAT
GAAGCTCGATACCCGCAGCGCCCGCAACCTCAAGGAAGCGCGCGAGTGCCTGGCACGCGAGCACTATGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAGCGGCTTGGACCTGGTGCAGTACATCCAGCAGCAGCATCCGCAACTGCCGGTGGCG
ATGATCACCGCCTATGGCAGTCTCGACACCGCCATCGGCGCCCTGAAGGCTGGCGCTTTCGATTTTCTGACCAAACCTGT
GGACCTCAACCGCCTTCGCGAACTCGTCAGCACCGCCTTGCGGCTGCGCGCACCGGCGGCCGAATCGCCAGTGGACAATC
GCCTGCTAGGCAGTTCGCCGCCGATGAAGGTCTTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCGGTCTAC
ATTAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCCCGCCTGATTCACGAACAGGGTCCACGCAGCGACAAGCCCTT
CGTGCCGGTCAATTGCGGCGCGATCCCTTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCAGTG
GCGCCATCGAGGACAAACCCGGACTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGACGAAGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTACGCGCGGTCGGCGGTGCGCAGGAAGTGATGGT
CGACGTCCGCATCCTCTGTGCCACCCACAAGGATCTGGCCAGCGAAGTGGCCGCAGGCCGCTTCCGCCAGGACCTGTATT
ACCGTCTAAACGTCATCGAACTGCGTGTGCCGCCATTACGCGAACGCCGTGAAGACATCGGCCTGCTCGCCGATGCCATG
CTGCGCCGGCTGGCACAGGAATGCGGCGACAGCAGTGCTCGGCTGCATCCTGATGCCCTGGCGAAGCTGGAAAACTATCG
TTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGGGCCTACACGCTCTGTGAAGACGACGAGATCAAGGCCG
GCGACCTGCGTCTAGCCGACAGCCCGGGCCTGTCGGAGAACGGCGAAGCCAGTCTGGCGCAGATCGATAATCTGGAAGAC
CACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCCCTTGAGGAAACCCGCTGGAACCGCACCGCGGCGGCCCAGCG
ACTGGGGCTGACCTTTCGCTCGATGCGTTACCGTCTGAAGAAACTCGGACTGGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.261

99.775

0.861
  pilR Acinetobacter baumannii strain A118

50.327

100

0.519
  luxO Vibrio cholerae strain A1552

38.479

100

0.387