Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RTE98_RS01690 Genome accession   NZ_CP136501
Coordinates   358665..360260 (+) Length   531 a.a.
NCBI ID   WP_316958466.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain L27     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 353665..365260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE98_RS01670 (RTE98_01670) pgeF 355419..356156 (-) 738 WP_316958465.1 peptidoglycan editing factor PgeF -
  RTE98_RS01675 (RTE98_01675) rluD 356153..357127 (-) 975 WP_063541901.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RTE98_RS01680 (RTE98_01680) - 357331..358320 (+) 990 WP_063541899.1 outer membrane protein assembly factor BamD -
  RTE98_RS01685 (RTE98_01685) - 358442..358675 (+) 234 WP_110775887.1 PP0621 family protein -
  RTE98_RS01690 (RTE98_01690) pilS 358665..360260 (+) 1596 WP_316958466.1 PAS domain-containing sensor histidine kinase Regulator
  RTE98_RS01695 (RTE98_01695) pilR 360388..361725 (+) 1338 WP_152481770.1 sigma-54 dependent transcriptional regulator Regulator
  RTE98_RS01700 (RTE98_01700) - 361769..362824 (-) 1056 WP_125867020.1 DUF2333 family protein -
  RTE98_RS01705 (RTE98_01705) - 363039..364634 (+) 1596 WP_102838687.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58837.88 Da        Isoelectric Point: 8.1622

>NTDB_id=891187 RTE98_RS01690 WP_316958466.1 358665..360260(+) (pilS) [Stutzerimonas frequens strain L27]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIVVAVLVQNPARDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIIAVAIANILLRGRIGFFVAAVAAIGLIYLTFYLSVSRPEASSQYVQAAALG
TLCFAAAFLVQGLTRRLQASENLARQRAEDVANLEALNALILQRMRTGIMVLGPQERVLLANQGALQLLGQDESLTGERL
APRCPELLKALQQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAH
EIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLAP
QQTVHVETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHSQAQVWLRLFRDEQSDLPIVEVLDDGPGIAADQLHNVFE
PFFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=891187 RTE98_RS01690 WP_316958466.1 358665..360260(+) (pilS) [Stutzerimonas frequens strain L27]
GTGGGCACTGAGAACCTCGCTTTTCTCGGCGATCAGGGGCGACGCATCCTCCGCCTGTATCACCTCTATCGCCTGACCAT
CGGCCTGGCACTGGTGCTGCTGATAAGCAGTGATCTGCACAATGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGTGCCTGGCTCTATCTGATCCTGAACATCGTGGTCGCCGTGCTGGTGCAGAACCCTGCGCGTGACCTGCCTGTGCTC
GGCCTGGCACTGATGGACGTGATCCTGCTGTCCGGCCTGTTCTATTTCGGTGGAGGCACGCCGAGTGGAATCGGCAACCT
GCTGATCATTGCCGTCGCGATCGCCAACATCCTGCTGCGCGGGCGCATCGGGTTCTTTGTTGCCGCCGTGGCAGCGATTG
GCCTGATCTACCTGACCTTCTATCTCAGCGTCAGCCGGCCTGAAGCCAGCAGCCAGTATGTCCAGGCCGCCGCGCTCGGC
ACCCTCTGTTTCGCTGCCGCGTTTCTCGTGCAAGGCCTCACGCGGCGCCTGCAGGCGAGCGAAAATCTCGCACGCCAGCG
CGCCGAGGACGTCGCCAACCTCGAAGCACTCAACGCGCTTATCCTGCAGCGCATGCGCACCGGCATCATGGTGCTGGGCC
CCCAGGAACGCGTGCTGCTGGCCAACCAGGGCGCGCTGCAGCTACTCGGCCAGGACGAGTCGCTGACCGGCGAGCGTCTT
GCCCCGCGCTGCCCGGAGTTGCTCAAAGCCCTGCAACAATGGCGCGGCAATCCCACCCTGCGCCCGCAGAATCTCAAGGC
AACGCCGGGTGGCCCGACGCTCCAGCCGAGCTTCGCCGCCCTGCAACATGGCAACAAGCTCGACACCCTGGTCTTTCTCG
AGGACATCTCGCAGATCGCGCAGAAAGCGCAGCAGCTCAAGCTCGCATCTCTCGGACGGCTCACCGCCAGCATTGCCCAC
GAGATACGCAACCCGCTGGGCGCCATCAGCCATGCCGCACAGCTGCTTCAGGAGTCCGAGGAGCTGGACGGCCCGGACCG
TCGCCTGGCGCAGATCATTCAGGACCACTCTCGGCGCATGAACCTGGTCATCGAGAACGTCCTGCAACTCTCGCGGCGCC
GGCAGGCCGAGCCACAGTTGTTGGACCTCAAGTACTGGCTGCATCGCTTCGCGAGCGAGTTCCGCCAAGGCCTGGCCCCA
CAACAGACGGTGCATGTGGAAACGATCGGCAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGTGGGCAGCAGCATTCGCAGGCGCAGGTCTGGCTGCGACTTTTCCGCGACG
AGCAGAGCGATCTGCCGATCGTCGAGGTGCTCGATGACGGCCCCGGCATTGCTGCCGACCAACTGCACAACGTGTTCGAG
CCGTTCTTTACCACCGAGAGCAAGGGCACCGGCCTGGGGCTTTACATCTCGCGAGAACTTTGCGAGAGCAATCAGGCTCG
ACTGGATTATCGCGAACGGCCCGAAGGCGGTAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGTAAGCTGAGTTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.725

100

0.657