Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABK11_RS05625 Genome accession   NZ_AP027685
Coordinates   1137347..1138084 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PSS-10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1132347..1143084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK11_RS05595 (VEE24_10790) yfiL 1132505..1132870 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  AABK11_RS05600 (VEE24_10800) aroF 1133080..1134150 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABK11_RS05605 (VEE24_10810) tyrA 1134161..1135282 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABK11_RS05610 (VEE24_10820) pheA 1135325..1136485 (-) 1161 WP_072778984.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABK11_RS05615 pheL 1136584..1136631 (-) 48 WP_010723158.1 phe operon leader peptide -
  AABK11_RS05620 (VEE24_10830) raiA 1136735..1137076 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABK11_RS05625 (VEE24_10840) comL 1137347..1138084 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABK11_RS05630 (VEE24_10850) rluD 1138219..1139199 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABK11_RS05635 (VEE24_10860) yfiH 1139196..1139927 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  AABK11_RS05640 (VEE24_10870) clpC 1140057..1142630 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=89099 AABK11_RS05625 WP_000197686.1 1137347..1138084(-) (comL) [Escherichia coli strain PSS-10]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=89099 AABK11_RS05625 WP_000197686.1 1137347..1138084(-) (comL) [Escherichia coli strain PSS-10]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment