Detailed information NTG0089099

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: OCU38_RS00905
• Genome accession: NZ_AP024885
• Coordinates: 193502..194662 (+)
• Length: 386 a.a.
• NCBI ID: WP_261823443.1
• Uniprot ID: -
• Organism: Vibrio neonatus strain JCM 21521
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 188502..199662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU38_RS00885	-	188745..191405 (-)	2661	WP_261823439.1	penicillin-binding protein 1A	-
OCU38_RS00890	-	191538..192398 (+)	861	WP_261823440.1	hypothetical protein	-
OCU38_RS00895	-	192398..192943 (+)	546	WP_261823441.1	PilN domain-containing protein	-
OCU38_RS00900	-	192940..193497 (+)	558	WP_261823442.1	hypothetical protein	-
OCU38_RS00905	pilQ	193502..194662 (+)	1161	WP_261823443.1	type IV pilus secretin PilQ	Machinery gene
OCU38_RS00910	aroK	194814..195332 (+)	519	WP_023402436.1	shikimate kinase AroK	-
OCU38_RS00915	aroB	195368..196471 (+)	1104	WP_261823444.1	3-dehydroquinate synthase	-
OCU38_RS00920	-	196494..197933 (+)	1440	WP_261823445.1	SPOR domain-containing protein	-
OCU38_RS00925	-	198001..198822 (+)	822	WP_261823446.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
OCU38_RS00930	rpe	198927..199598 (+)	672	WP_261823447.1	ribulose-phosphate 3-epimerase	-

Sequence

Protein

• Length: 386 a.a.
• Molecular weight: 42384.35 Da
• Isoelectric Point: 5.0204

>NTDB_id=89099 OCU38_RS00905 WP_261823443.1 193502..194662(+) (pilQ) [Vibrio neonatus strain JCM 21521]
MQRISFILILCGFFSPVLSEEQQAEEQQWFSVPVVKTSDSSAKVVTLTPSKPQPTNPLETLNTLAVHPPLSSQLFAIKYA
KASDIADILDHHRRVGTVSEFGSIAVDERTNSLLIYDHPDNLVRIVEIIESLDIPVKQVQIEARIVTINEGELDELGVRW
GFSNINTDSKITPSIEASKGSTDLADHLNVNLGLANPNASTVAFQLAKLGSDTLLDLELSALQAESRAEIISSPRLVTTN
KQAAYIEQGSEIPYLEAASSGATSISFRKAVLSLKVVPQITPDNHLVLDLIVTQDRPGQVVKTGIGESVAIDTQRVQTQV
LVENGETIVLGGIYQKSITRNVEKVPYLSDIPWFGRFFKRTSDKFGRSELLIFVTPSILFPKKDKI

Nucleotide

• Length: 1161 bp

>NTDB_id=89099 OCU38_RS00905 WP_261823443.1 193502..194662(+) (pilQ) [Vibrio neonatus strain JCM 21521]
ATGCAACGTATTTCTTTCATCCTTATTTTGTGTGGTTTTTTTAGCCCAGTTCTGTCTGAGGAACAGCAGGCCGAGGAACA
GCAGTGGTTCTCGGTACCTGTGGTTAAGACGAGCGACAGCTCAGCTAAAGTGGTGACCCTAACACCAAGTAAACCACAGC
CTACTAATCCACTAGAGACATTAAATACTTTAGCTGTTCATCCACCGCTATCCTCACAACTGTTCGCAATTAAATACGCT
AAAGCGTCAGACATTGCCGATATTTTGGATCATCATCGCCGAGTAGGGACAGTTTCAGAATTTGGCTCTATCGCGGTCGA
TGAGAGAACTAACTCACTACTTATTTATGACCATCCCGACAATTTAGTGCGCATCGTTGAGATTATTGAATCTTTAGATA
TCCCAGTTAAACAAGTACAAATTGAGGCCAGAATCGTCACTATTAATGAGGGGGAATTGGATGAGCTTGGCGTGCGTTGG
GGCTTTAGCAATATCAATACGGATAGCAAAATCACCCCTAGTATTGAAGCATCAAAGGGCAGTACGGATTTGGCAGACCA
TTTAAATGTGAACTTGGGACTAGCCAACCCGAATGCCTCCACAGTTGCTTTTCAATTGGCAAAACTAGGTTCAGATACCT
TACTGGATTTAGAGCTTTCTGCTCTGCAGGCTGAATCAAGAGCCGAAATTATTTCCAGTCCAAGGTTAGTCACCACCAAT
AAACAGGCAGCCTATATTGAGCAGGGCTCTGAAATCCCCTATTTAGAAGCGGCGTCTAGTGGCGCGACATCTATTTCATT
TCGTAAAGCGGTGCTGAGTTTGAAGGTAGTTCCGCAGATAACGCCAGATAATCATCTGGTTTTAGACTTGATAGTGACCC
AAGACAGACCTGGGCAAGTGGTCAAAACTGGCATCGGTGAATCGGTAGCTATCGACACTCAACGTGTGCAAACGCAAGTT
TTGGTTGAAAATGGTGAAACTATCGTACTGGGTGGAATTTATCAGAAAAGCATTACGCGAAATGTAGAGAAAGTGCCGTA
TCTTTCTGATATTCCTTGGTTTGGTCGCTTTTTTAAGCGAACTTCAGACAAGTTTGGACGCAGTGAGTTGTTGATATTTG
TTACTCCATCCATCCTCTTTCCAAAAAAAGATAAAATATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (221-379)

• Bacterial type II/III secretion system short domain (Secretin_N) (73-138)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio campbellii strain DS40M4	64.22	84.715	0.544
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	63.863	83.161	0.531
pilQ	Vibrio cholerae strain A1552	63.863	83.161	0.531
pilQ	Legionella pneumophila strain ERS1305867	44.411	85.751	0.381
pilQ	Legionella pneumophila strain Lp02	44.411	85.751	0.381
comE	Haemophilus influenzae Rd KW20	44.728	81.088	0.363
comE	Haemophilus influenzae 86-028NP	44.409	81.088	0.36